Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1211 113 9e-20
seq1083 113 9e-20
seq259 113 9e-20
seq16 113 9e-20
>seq1211
Length=11859842
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 2422286 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 2422345
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 2422346 CCCACATCGGGC 2422357
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3177489 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3177548
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3177549 CCCACATCGGGC 3177560
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3179158 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3179217
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3179218 CCCACATCGGGC 3179229
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3180793 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3180852
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3180853 CCCACATCGGGC 3180864
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3182451 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3182510
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3182511 CCCACATCGGGC 3182522
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3184122 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3184181
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3184182 CCCACATCGGGC 3184193
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3185780 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3185839
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3185840 CCCACATCGGGC 3185851
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3187429 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3187488
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3187489 CCCACATCGGGC 3187500
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3189078 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3189137
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3189138 CCCACATCGGGC 3189149
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3190736 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3190795
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3190796 CCCACATCGGGC 3190807
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3192398 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3192457
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3192458 CCCACATCGGGC 3192469
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3194059 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3194118
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3194119 CCCACATCGGGC 3194130
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3195721 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3195780
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3195781 CCCACATCGGGC 3195792
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3197382 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3197441
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3197442 CCCACATCGGGC 3197453
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3199044 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3199103
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3199104 CCCACATCGGGC 3199115
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3200673 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3200732
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3200733 CCCACATCGGGC 3200744
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3202307 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3202366
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3202367 CCCACATCGGGC 3202378
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 3203929 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 3203988
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 3203989 CCCACATCGGGC 3204000
>seq1083
Length=2074
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 1515 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1456
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 1455 CCCACATCGGGC 1444
>seq259
Length=1668
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 1140 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 1081
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 1080 CCCACATCGGGC 1069
>seq16
Length=1894
Score = 113 bits (124), Expect = 9e-20
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||
Sbjct 638 GCCCGGTTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 579
Query 142564 CCCACATCGGGC 142575
||||||||||||
Sbjct 578 CCCACATCGGGC 567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027820773133497
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |