Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq1213 100 2e-16
seq1207 84.2 2e-11
>seq1213
Length=7437389
Score = 100 bits (110), Expect = 2e-16
Identities = 164/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958
|||| || | ||| || |||||||| ||||| || |||||||||||||||||| || |
Sbjct 1837868 AACCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTC-G 1837926
Query 33959 CCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017
|| || || |||| ||||| ||||| || || |||||||| ||||||||||||
Sbjct 1837927 GAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGT 1837986
Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA-TCAGTAGATTC 34076
|| | || ||| |||||| || || ||| | |||| | | ||| | | ||
Sbjct 1837987 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CATTCTCAATCGAGTCACTCGGCTC 1838045
Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| | || || || || || || ||||| |||||||||||||||||
Sbjct 1838046 CACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/228 (70%), Gaps = 20/228 (9%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968
|| || |||||||| ||||| || |||||||||||||||||| || | || || ||
Sbjct 1844563 AGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGA-AAGGGTGCG 1844505
Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028
|||| ||||| ||||| || || |||||||| |||||||||||| || | || |||
Sbjct 1844504 GCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTC 1844445
Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC---ATTCGAC 34085
|||||| | | || |||| ||||| | ||| | || || | || ||
Sbjct 1844444 CTTGTCC-TGGATCTTCGCTT--------TCACATTCTCAATCGAGTCACTCGGCTCCAC 1844394
Query 34086 C------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
| || || || || || || ||||| |||||||||||||||||
Sbjct 1844393 CTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958
|||| || | || |||||||| ||||| || || ||||||||| |||||||| || |
Sbjct 1844802 AACCGCCGCGGAGACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGG 1844743
Query 33959 CCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017
|| || || |||| ||||| ||||| || || |||||||| ||||||||||||
Sbjct 1844742 A-AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGT 1844684
Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA-TCAGTAGATTC 34076
|| | || ||| |||||| || || ||| | |||| | | ||| | | ||
Sbjct 1844683 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CATTCTCAATCGAGTCACTCGGCTC 1844625
Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| | || || || || || || ||||| |||||||||||||||||
Sbjct 1844624 CACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574
Score = 89.7 bits (98), Expect = 4e-13
Identities = 97/126 (77%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968
|| || |||||||| ||||| || |||||||||||||||||| || | || || ||
Sbjct 1838107 AGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTC-GGAAAGGGTGCG 1838165
Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028
|||| ||||| ||||| || || |||||||| |||||||||||| || | || ||
Sbjct 1838166 GCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTC 1838225
Query 34029 TTTGTC 34034
||||||
Sbjct 1838226 TTTGTC 1838231
Score = 87.8 bits (96), Expect = 1e-12
Identities = 97/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968
|| || |||||||| ||||| || |||||||||||| ||||| || | || || ||
Sbjct 1844335 AGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGA-AAGGGTGCG 1844277
Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028
|||| ||||| ||||| || || |||||||| |||||||||||| || | || |||
Sbjct 1844276 GCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTC 1844217
Query 34029 TTTGTCC 34035
||||||
Sbjct 1844216 CTTGTCC 1844210
>seq1207
Length=20116479
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/221 (69%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || ||||| || ||||| || |||||||||||| ||||| || | || |||
Sbjct 13120227 AGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGC 13120286
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
| || ||||| |||||||| ||||| || || ||||||||||| || | | |||
Sbjct 13120287 CCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCC 13120346
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATTCGCATTCGACC 34086
||||| ||| || ||| | | || || | ||||| || ||| || |
Sbjct 13120347 TTGTCTTGAATCTTAGCCTTTA---CATTCTCAATAGAATCAGAAGGCTCGACCTCAAGA 13120403
Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
||||| ||||| || || || |||||||| || || |||||
Sbjct 13120404 GTTATAGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397056510696034
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |