Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1213 100 2e-16 seq1207 84.2 2e-11 >seq1213 Length=7437389 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 |||| || | ||| || |||||||| ||||| || |||||||||||||||||| || | Sbjct 1837868 AACCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTC-G 1837926 Query 33959 CCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 || || || |||| ||||| ||||| || || |||||||| |||||||||||| Sbjct 1837927 GAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGT 1837986 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA-TCAGTAGATTC 34076 || | || ||| |||||| || || ||| | |||| | | ||| | | || Sbjct 1837987 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CATTCTCAATCGAGTCACTCGGCTC 1838045 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || || ||||| ||||||||||||||||| Sbjct 1838046 CACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/228 (70%), Gaps = 20/228 (9%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || |||||||| ||||| || |||||||||||||||||| || | || || || Sbjct 1844563 AGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGA-AAGGGTGCG 1844505 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| ||||| ||||| || || |||||||| |||||||||||| || | || ||| Sbjct 1844504 GCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTC 1844445 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC---ATTCGAC 34085 |||||| | | || |||| ||||| | ||| | || || | || || Sbjct 1844444 CTTGTCC-TGGATCTTCGCTT--------TCACATTCTCAATCGAGTCACTCGGCTCCAC 1844394 Query 34086 C------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || || || || || || ||||| ||||||||||||||||| Sbjct 1844393 CTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 |||| || | || |||||||| ||||| || || ||||||||| |||||||| || | Sbjct 1844802 AACCGCCGCGGAGACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGG 1844743 Query 33959 CCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 || || || |||| ||||| ||||| || || |||||||| |||||||||||| Sbjct 1844742 A-AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGT 1844684 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA-TCAGTAGATTC 34076 || | || ||| |||||| || || ||| | |||| | | ||| | | || Sbjct 1844683 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CATTCTCAATCGAGTCACTCGGCTC 1844625 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || || ||||| ||||||||||||||||| Sbjct 1844624 CACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || |||||||| ||||| || |||||||||||||||||| || | || || || Sbjct 1838107 AGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTC-GGAAAGGGTGCG 1838165 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| ||||| ||||| || || |||||||| |||||||||||| || | || || Sbjct 1838166 GCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTC 1838225 Query 34029 TTTGTC 34034 |||||| Sbjct 1838226 TTTGTC 1838231 Score = 87.8 bits (96), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || |||||||| ||||| || |||||||||||| ||||| || | || || || Sbjct 1844335 AGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGA-AAGGGTGCG 1844277 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| ||||| ||||| || || |||||||| |||||||||||| || | || ||| Sbjct 1844276 GCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTC 1844217 Query 34029 TTTGTCC 34035 |||||| Sbjct 1844216 CTTGTCC 1844210 >seq1207 Length=20116479 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || ||||| || |||||||||||| ||||| || | || ||| Sbjct 13120227 AGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGC 13120286 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||| |||||||| ||||| || || ||||||||||| || | | ||| Sbjct 13120287 CCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCC 13120346 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACT---ATCAGTAGATTCGCATTCGACC 34086 ||||| ||| || ||| | | || || | ||||| || ||| || | Sbjct 13120347 TTGTCTTGAATCTTAGCCTTTA---CATTCTCAATAGAATCAGAAGGCTCGACCTCAAGA 13120403 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| ||||| || || || |||||||| || || ||||| Sbjct 13120404 GTTATAGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397056510696034