Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1213 129 6e-25
seq1207 86.0 7e-12
>seq1213
Length=7437389
Score = 129 bits (142), Expect = 6e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||||| || | ||| |||||| ||||||||||| || | || || || |
Sbjct 1844333 ACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCC 1844274
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || | |||||| || |||||||| || |||||||| || | ||| | || ||||||
Sbjct 1844273 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844214
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || || | || | | || ||| |||| ||||| || | |||||
Sbjct 1844213 GTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1844154
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| ||||| || |||||||| |||||||| |||||
Sbjct 1844153 GGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118
Score = 129 bits (142), Expect = 6e-25
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||||| || | ||| |||||| ||||| ||||| || | || || || |
Sbjct 1844561 ACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCC 1844502
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || | |||||| || |||||||| || |||||||| || | ||| | || ||||||
Sbjct 1844501 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844442
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || ||| | || | | || ||| |||| ||||| || | |||||
Sbjct 1844441 GTCCTGGATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1844382
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| ||||| || || ||||| ||||||||||||||
Sbjct 1844381 GGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346
Score = 123 bits (136), Expect = 3e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||||| ||| | ||||| || |||||| || || ||||| || | || || || |
Sbjct 1844789 ACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCC 1844730
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || | |||||| || |||||||| || |||||||| || | ||| | || ||||||
Sbjct 1844729 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844670
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || || | || | | || ||| |||| ||||| || | |||||
Sbjct 1844669 GTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1844610
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| ||||| || || ||||| ||||||||||||||
Sbjct 1844609 GGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574
Score = 122 bits (134), Expect = 9e-23
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||| ||||| || | || || || |||| || | |||||| || |||||
Sbjct 1837905 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAA 1837964
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||| || |||||||| || | ||| | || |||||||||| ||| || || | |
Sbjct 1837965 TATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 1838024
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | | || ||| |||| ||||| || | |||||||| ||||| || || ||||| ||
Sbjct 1838025 CTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCAC 1838084
Query 42197 AAAGATTTGCAT 42208
||||||||||||
Sbjct 1838085 AAAGATTTGCAT 1838096
>seq1207
Length=20116479
Score = 86.0 bits (94), Expect = 7e-12
Identities = 138/196 (70%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||||||||||||||| || | || || ||| | || |||| ||||||||||||||
Sbjct 17430774 CTCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAA 17430833
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| || || ||||| || | || | | ||| || ||| ||| |||| | ||| |
Sbjct 17430834 GATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATCC-TGAATTTTCGCTTTCACGT 17430892
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
|| | | | || || | || || || | || || ||||| || || || || ||||
Sbjct 17430893 TCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTA 17430952
Query 42196 CAAAGATTTGCATTTT 42211
| || || ||||||||
Sbjct 17430953 CGAAAATCTGCATTTT 17430968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543204536375280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |