Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1213 118 1e-21 seq1207 98.7 1e-15 >seq1213 Length=7437389 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | |||||| || |||| ||||| || || ||||||||||| || | Sbjct 1837869 ACCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 1837928 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| ||||||| | |||||| || || | || || |||||||| || || || Sbjct 1837929 AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGG 1837988 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCA 64394 ||| || || || || || || || ||| ||| ||| | | |||| |||| |||| Sbjct 1837989 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGC-TCCA 1838047 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||||||| || | || || || || |||||||| Sbjct 1838048 CCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096 Score = 107 bits (118), Expect = 2e-18 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || |||| ||||| || || ||||||||||| || | | |||||| |||| Sbjct 1844558 AAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTC 1844499 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | |||||| || || | || || |||||||| || || ||||| || || || || Sbjct 1844498 TTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTC 1844439 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACG 64408 || | | || ||||| ||| ||| | | |||| |||| ||||| || | || | | Sbjct 1844438 CTGGA-TCTTCGCTTTCACATTCTCAATCGAGTCACTCGGC-TCCACCTCAAGTGTGATG 1844381 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| || | || || || || |||||||| Sbjct 1844380 GTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || |||| ||||| || || ||||||||||| || | | |||||| |||| Sbjct 1838112 AAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTC 1838171 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | |||||| || || | || || |||||||| || || ||||| |||||||| || Sbjct 1838172 TTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTC 1838231 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 |||||| || ||| || || | | |||| | || || || | ||| | || Sbjct 1838232 TTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGT 1838291 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | || || ||||| || ||||| Sbjct 1838292 CTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 1838324 >seq1207 Length=20116479 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| || || || |||| ||||| || |||||||| ||||| || | Sbjct 17430739 CCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGAT 17430798 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| ||| | || || | ||||| || || | || || || ||||| || || || Sbjct 17430799 AGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGT 17430858 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || ||||| || || ||||| ||||| || ||| | | ||||| | || || Sbjct 17430859 ATACCCTCTTTATCCTGAATTTTC-GCTTTCACGTTCTCGATGGAATCACTTGGCTCAAC 17430917 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | |||| || || || || | ||||||||||||||| |||||||| Sbjct 17430918 CTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCATTTT 17430968 Score = 91.5 bits (100), Expect = 1e-13 Identities = 178/261 (68%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 153672 TTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCG 153731 |||| ||||| ||| || | || || || || |||| |||| ||||||||| || Sbjct 7940703 TTGTTGACGGTGAATTTAATGGGGTCGGCAGCAGGCCTAGTGCGCAGATAATACATTCCC 7940644 Query 153732 GTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGC 153791 ||||| | ||||||||||| | || | |||| ||| || | | | || | ||||| Sbjct 7940643 GTTTTGAGCCCACGTTTCCAGGCGTAGAAATGCATGCTCGTGATTTTCCCGTAGTTGGGC 7940584 Query 153792 TGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCC 153851 | | || ||| ||||| ||||||||||| || ||||| | | ||||| || ||| Sbjct 7940583 TCCTTCATGTACAAGTTAAGAGACTGGCTCTGGTCAATGAACGGAGCACGATCAGCTGCC 7940524 Query 153852 ATGTCAATCAAG---TTTTTACTG-CTCATTTCCCACACAGTTTTGTAGACGGCTTTAAT 153907 | |||| || ||||| ||| | ||||| || |||||||||| ||||| | Sbjct 7940523 A----AATCGAGTATTTTTTTCTGAGGTAACTCCCAAACCGTTTTGTAGAGCGCTTTGAG 7940468 Query 153908 GTCGTCGGGTATGCGATCAAT 153928 || || || || | ||||| Sbjct 7940467 ATCCTCCGGAATTCCGTCAAT 7940447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499637199153480