Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq1213 118 1e-21
seq1207 98.7 1e-15
>seq1213
Length=7437389
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| |||| | |||||| || |||| ||||| || || ||||||||||| || |
Sbjct 1837869 ACCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 1837928
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| ||||||| | |||||| || || | || || |||||||| || || ||
Sbjct 1837929 AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGG 1837988
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCA 64394
||| || || || || || || || ||| ||| ||| | | |||| |||| ||||
Sbjct 1837989 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGC-TCCA 1838047
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
| || | || | ||||||||| || | || || || || ||||||||
Sbjct 1838048 CCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096
Score = 107 bits (118), Expect = 2e-18
Identities = 156/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| || |||| ||||| || || ||||||||||| || | | |||||| ||||
Sbjct 1844558 AAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTC 1844499
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| | |||||| || || | || || |||||||| || || ||||| || || || ||
Sbjct 1844498 TTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTC 1844439
Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACG 64408
|| | | || ||||| ||| ||| | | |||| |||| ||||| || | || | |
Sbjct 1844438 CTGGA-TCTTCGCTTTCACATTCTCAATCGAGTCACTCGGC-TCCACCTCAAGTGTGATG 1844381
Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||||| || | || || || || ||||||||
Sbjct 1844380 GTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346
Score = 105 bits (116), Expect = 7e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| || |||| ||||| || || ||||||||||| || | | |||||| ||||
Sbjct 1838112 AAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTC 1838171
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| | |||||| || || | || || |||||||| || || ||||| |||||||| ||
Sbjct 1838172 TTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTC 1838231
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|||||| || ||| || || | | |||| | || || || | ||| | ||
Sbjct 1838232 TTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGT 1838291
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| || || | || || ||||| || |||||
Sbjct 1838292 CTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 1838324
>seq1207
Length=20116479
Score = 98.7 bits (108), Expect = 1e-15
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || || | ||| || || || |||| ||||| || |||||||| ||||| || |
Sbjct 17430739 CCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGAT 17430798
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||| ||| | || || | ||||| || || | || || || ||||| || || ||
Sbjct 17430799 AGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGT 17430858
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || ||||| || || ||||| ||||| || ||| | | ||||| | || ||
Sbjct 17430859 ATACCCTCTTTATCCTGAATTTTC-GCTTTCACGTTCTCGATGGAATCACTTGGCTCAAC 17430917
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | |||| || || || || | ||||||||||||||| ||||||||
Sbjct 17430918 CTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCATTTT 17430968
Score = 91.5 bits (100), Expect = 1e-13
Identities = 178/261 (68%), Gaps = 8/261 (3%)
Strand=Plus/Minus
Query 153672 TTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCG 153731
|||| ||||| ||| || | || || || || |||| |||| ||||||||| ||
Sbjct 7940703 TTGTTGACGGTGAATTTAATGGGGTCGGCAGCAGGCCTAGTGCGCAGATAATACATTCCC 7940644
Query 153732 GTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGC 153791
||||| | ||||||||||| | || | |||| ||| || | | | || | |||||
Sbjct 7940643 GTTTTGAGCCCACGTTTCCAGGCGTAGAAATGCATGCTCGTGATTTTCCCGTAGTTGGGC 7940584
Query 153792 TGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCC 153851
| | || ||| ||||| ||||||||||| || ||||| | | ||||| || |||
Sbjct 7940583 TCCTTCATGTACAAGTTAAGAGACTGGCTCTGGTCAATGAACGGAGCACGATCAGCTGCC 7940524
Query 153852 ATGTCAATCAAG---TTTTTACTG-CTCATTTCCCACACAGTTTTGTAGACGGCTTTAAT 153907
| |||| || ||||| ||| | ||||| || |||||||||| ||||| |
Sbjct 7940523 A----AATCGAGTATTTTTTTCTGAGGTAACTCCCAAACCGTTTTGTAGAGCGCTTTGAG 7940468
Query 153908 GTCGTCGGGTATGCGATCAAT 153928
|| || || || | |||||
Sbjct 7940467 ATCCTCCGGAATTCCGTCAAT 7940447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499637199153480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |