Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1207 102 8e-17 seq1211 82.4 8e-11 >seq1207 Length=20116479 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| ||||||||| | || ||| ||||| | ||| ||||| | Sbjct 17430772 GACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCG 17430831 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || || || || || || |||||||| ||||| || ||| |||| | ||| | Sbjct 17430832 AAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATC-CTGAATTTTCGCTTTCAC 17430890 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | || || | | ||| ||||| | || | ||||| ||||| |||||||| Sbjct 17430891 GTTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTT 17430950 Query 138600 TACAAAAATCTGCAT 138614 ||| ||||||||||| Sbjct 17430951 TACGAAAATCTGCAT 17430965 >seq1211 Length=11859842 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 57307 ACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTCGCTGCCG 57366 ||||| || | ||| || || || ||| | || || | ||||| || || | ||||| Sbjct 7148541 ACGTTCCCAAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCATGGTTTTTGCCG 7148482 Query 57367 GTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGA 57426 ||| |||||||| | || || || |||||||| || | ||||| ||||| || ||| Sbjct 7148481 TGGGGATTAAAGTGGGCACCGGCTGAGGTGCAGCCATTTGTTGTGTCACCGAATTCATGA 7148422 Query 57427 ACGTGAAATCCGTGC 57441 |||||||| |||||| Sbjct 7148421 ACGTGAAAGCCGTGC 7148407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496254850608240