Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 102 8e-17
seq1211 82.4 8e-11
>seq1207
Length=20116479
Score = 102 bits (112), Expect = 8e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||||||||| ||||||||| | || ||| ||||| | ||| ||||| |
Sbjct 17430772 GACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCG 17430831
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539
|||| || || || || || || |||||||| ||||| || ||| |||| | ||| |
Sbjct 17430832 AAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATC-CTGAATTTTCGCTTTCAC 17430890
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
| || | || || | | ||| ||||| | || | ||||| ||||| ||||||||
Sbjct 17430891 GTTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTT 17430950
Query 138600 TACAAAAATCTGCAT 138614
||| |||||||||||
Sbjct 17430951 TACGAAAATCTGCAT 17430965
>seq1211
Length=11859842
Score = 82.4 bits (90), Expect = 8e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 57307 ACGTTGCCCAAGTCGCCGACGTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTCGCTGCCG 57366
||||| || | ||| || || || ||| | || || | ||||| || || | |||||
Sbjct 7148541 ACGTTCCCAAGGTCCCCAACATGTCGCTCAGCAGCATCAGGAGCACCATGGTTTTTGCCG 7148482
Query 57367 GTGGGGTTAAAGTGCTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGA 57426
||| |||||||| | || || || |||||||| || | ||||| ||||| || |||
Sbjct 7148481 TGGGGATTAAAGTGGGCACCGGCTGAGGTGCAGCCATTTGTTGTGTCACCGAATTCATGA 7148422
Query 57427 ACGTGAAATCCGTGC 57441
|||||||| ||||||
Sbjct 7148421 ACGTGAAAGCCGTGC 7148407
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496254850608240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |