Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 123 4e-23
seq1207 118 2e-21
>seq1209
Length=14622995
Score = 123 bits (136), Expect = 4e-23
Identities = 372/571 (65%), Gaps = 5/571 (1%)
Strand=Plus/Minus
Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970
||||| | ||||| ||||| ||| ||| || || || ||||| ||| |||||||||
Sbjct 7446615 TTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 7446556
Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA 160030
| | ||||||| ||||||| |||||| ||||||||||| || | ||||| | |
Sbjct 7446555 CTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 7446496
Query 160031 CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090
|| ||| || | || || || || || || ||||| |||| |||| | | | |||
Sbjct 7446495 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGGGGCT 7446436
Query 160091 TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCG- 160149
|| | | ||||||| ||||| || || ||||| || | || |||| |||
Sbjct 7446435 TTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCA-GCGT 7446377
Query 160150 CTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAG 160209
|| |||||||||||||| ||| | ||| |||||| || ||| |||||||
Sbjct 7446376 CTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAG 7446317
Query 160210 CTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGT 160269
||||||||||| | || | ||||||| ||| | || | ||| ||| |
Sbjct 7446316 AAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACG 7446257
Query 160270 CGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCC 160329
||||| || || || || | || | | || || ||||||| | ||
Sbjct 7446256 AGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAACGATGCC 7446197
Query 160330 GTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAG 160389
|| ||| ||||| |||||||| || | ||| |||||||| | ||| | | || ||
Sbjct 7446196 ATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATTAAG 7446137
Query 160390 TCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGC 160449
| |||||| | || | ||| | |||||||| || || || | ||||| ||
Sbjct 7446136 GC---CTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGA 7446080
Query 160450 AGCCTGAGCAGTTTTGTACATGGCCCAGATG 160480
|| ||| | ||||| | ||||||||
Sbjct 7446079 GGCAACAGCTTTCTTGTAAAACTCCCAGATG 7446049
>seq1207
Length=20116479
Score = 118 bits (130), Expect = 2e-21
Identities = 312/474 (66%), Gaps = 2/474 (0%)
Strand=Plus/Minus
Query 203831 ACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAG 203890
|||| | |||||| || ||||| | ||||| || | |||||||| | | ||||||
Sbjct 7940712 ACCTCCTTCTTGTTGACGGTGAATTTAATGGGGTCGGCAGCAGGCCTAGTGCGCAGATAA 7940653
Query 203891 TACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC 203950
||||| || || || || || | ||| |||| | |||||| | | ||| |
Sbjct 7940652 TACATTCCCGTTTTGAGCCCACGTTTCCAGGCGTAGAAATGCATGCTCGTGATTTTCCCG 7940593
Query 203951 ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGA 204010
|||||| || ||||| | ||| ||||||||||| ||||| ||||| || || |||
Sbjct 7940592 TAGTTGGGCTCCTTCATGTACAAGTTAAGAGACTGGCTCTGGTCAATGAACGGAGCACGA 7940533
Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070
|| || |||| || || || | ||||| | | |||||| ||||| ||| | | ||
Sbjct 7940532 TCAGCTGCCAAATCGAGTATTTTTTTCTGAGGTAACTCCCAAACCGTTTTGTAGAGCGCT 7940473
Query 204071 CTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT 204129
|| | | || | || | | || || || || || | | | || |
Sbjct 7940472 TTGAGATCCTCCGG-AATTCCGTCAATATCTTGAATGGATCCCTGATTAGAAATAATCGC 7940414
Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189
| || | | ||| ||| ||||| | ||||| || || | || ||| | |||
Sbjct 7940413 CGTCTTTAGGTGGTCCGACCAAATGCCGAGGTCAATCAGATCACGAAGCATGTGTGAGTT 7940354
Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249
| ||| || ||||| || ||||| || | || || |||| ||| |||| | ||||||
Sbjct 7940353 AACGATTTGGAAGTCACCCGACAGAACACGACGAGTAAACACATTGCTGGTCACTGGTTC 7940294
Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303
| || ||| |||| || | ||||||||| || ||||||||||||||||||
Sbjct 7940293 GGTCGACTCTGTGTTACCCAGAATCTGAGCTGTCGAGGCCGTGGGCATGGGAGC 7940240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795143103701520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |