Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1209 123 4e-23 seq1207 118 2e-21 >seq1209 Length=14622995 Score = 123 bits (136), Expect = 4e-23 Identities = 372/571 (65%), Gaps = 5/571 (1%) Strand=Plus/Minus Query 159911 TTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTG 159970 ||||| | ||||| ||||| ||| ||| || || || ||||| ||| ||||||||| Sbjct 7446615 TTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 7446556 Query 159971 GACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA 160030 | | ||||||| ||||||| |||||| ||||||||||| || | ||||| | | Sbjct 7446555 CTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 7446496 Query 160031 CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 || ||| || | || || || || || || ||||| |||| |||| | | | ||| Sbjct 7446495 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGGGGCT 7446436 Query 160091 TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCG- 160149 || | | ||||||| ||||| || || ||||| || | || |||| ||| Sbjct 7446435 TTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCA-GCGT 7446377 Query 160150 CTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAG 160209 || |||||||||||||| ||| | ||| |||||| || ||| ||||||| Sbjct 7446376 CTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAG 7446317 Query 160210 CTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGT 160269 ||||||||||| | || | ||||||| ||| | || | ||| ||| | Sbjct 7446316 AAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACG 7446257 Query 160270 CGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCC 160329 ||||| || || || || | || | | || || ||||||| | || Sbjct 7446256 AGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAACGATGCC 7446197 Query 160330 GTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAG 160389 || ||| ||||| |||||||| || | ||| |||||||| | ||| | | || || Sbjct 7446196 ATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATTAAG 7446137 Query 160390 TCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGC 160449 | |||||| | || | ||| | |||||||| || || || | ||||| || Sbjct 7446136 GC---CTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGA 7446080 Query 160450 AGCCTGAGCAGTTTTGTACATGGCCCAGATG 160480 || ||| | ||||| | |||||||| Sbjct 7446079 GGCAACAGCTTTCTTGTAAAACTCCCAGATG 7446049 >seq1207 Length=20116479 Score = 118 bits (130), Expect = 2e-21 Identities = 312/474 (66%), Gaps = 2/474 (0%) Strand=Plus/Minus Query 203831 ACCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAG 203890 |||| | |||||| || ||||| | ||||| || | |||||||| | | |||||| Sbjct 7940712 ACCTCCTTCTTGTTGACGGTGAATTTAATGGGGTCGGCAGCAGGCCTAGTGCGCAGATAA 7940653 Query 203891 TACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC 203950 ||||| || || || || || | ||| |||| | |||||| | | ||| | Sbjct 7940652 TACATTCCCGTTTTGAGCCCACGTTTCCAGGCGTAGAAATGCATGCTCGTGATTTTCCCG 7940593 Query 203951 ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGA 204010 |||||| || ||||| | ||| ||||||||||| ||||| ||||| || || ||| Sbjct 7940592 TAGTTGGGCTCCTTCATGTACAAGTTAAGAGACTGGCTCTGGTCAATGAACGGAGCACGA 7940533 Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070 || || |||| || || || | ||||| | | |||||| ||||| ||| | | || Sbjct 7940532 TCAGCTGCCAAATCGAGTATTTTTTTCTGAGGTAACTCCCAAACCGTTTTGTAGAGCGCT 7940473 Query 204071 CTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT 204129 || | | || | || | | || || || || || | | | || | Sbjct 7940472 TTGAGATCCTCCGG-AATTCCGTCAATATCTTGAATGGATCCCTGATTAGAAATAATCGC 7940414 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 | || | | ||| ||| ||||| | ||||| || || | || ||| | ||| Sbjct 7940413 CGTCTTTAGGTGGTCCGACCAAATGCCGAGGTCAATCAGATCACGAAGCATGTGTGAGTT 7940354 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 | ||| || ||||| || ||||| || | || || |||| ||| |||| | |||||| Sbjct 7940353 AACGATTTGGAAGTCACCCGACAGAACACGACGAGTAAACACATTGCTGGTCACTGGTTC 7940294 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303 | || ||| |||| || | ||||||||| || |||||||||||||||||| Sbjct 7940293 GGTCGACTCTGTGTTACCCAGAATCTGAGCTGTCGAGGCCGTGGGCATGGGAGC 7940240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795143103701520