Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1213 127 5e-24 seq1207 107 5e-18 >seq1213 Length=7437389 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || ||||||||||| || | ||||||||| | | || Sbjct 1838104 CGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTG 1838163 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| ||||||||| ||||| || ||||||||||| ||||| ||| ||| Sbjct 1838164 CGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCT 1838223 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| ||||||| ||| | | ||| | | || || ||||| Sbjct 1838224 TCTTTGTCTTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAA 1838283 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || ||||| || || || Sbjct 1838284 GTAATAGTCTTTCCAGTGAGTGTCTTCACGAATATCTG 1838321 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| ||||| || |||||||||||||| || | ||||||||| | | || Sbjct 1844794 CGGAGACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAAAGGGTG 1844735 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| ||||||||| ||||| || ||||||||||| ||||| ||| || Sbjct 1844734 CGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCC 1844675 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| || | | ||| | | || || || | Sbjct 1844674 TCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGT 1844615 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| ||||| Sbjct 1844614 GTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTG 1844577 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| |||||||||||||| || | ||||||||| | | || | || ||| Sbjct 1837885 AGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 1837944 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||| ||||| || ||||||||||| ||||| ||| || || ||| Sbjct 1837945 TCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCC 1838004 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | | ||| | | || || || | ||||| ||| Sbjct 1838005 TGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTC 1838064 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || |||||||| ||||| Sbjct 1838065 TTGCCAGTAAGTGTCTTCACAAAGATTTG 1838093 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || ||||||||||| || | ||||||||| | | || Sbjct 1844566 CGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTG 1844507 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| ||||||||| ||||| || ||||||||||| ||||| ||| || Sbjct 1844506 CGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCC 1844447 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||| || | | ||| | | || || || | Sbjct 1844446 TCCTTGTCCTGGATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGT 1844387 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| ||||| Sbjct 1844386 GTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTG 1844349 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || ||||||||||| || | |||||||| | | || Sbjct 1844338 CGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTG 1844279 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| ||||||||| ||||| || ||||||||||| ||||| ||| || Sbjct 1844278 CGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCC 1844219 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| || | | ||| | | || || || | Sbjct 1844218 TCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGT 1844159 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || |||||||| || || Sbjct 1844158 GTGATGGTCTTGCCAGTAAGCGTCTTCACAAAGATCTG 1844121 >seq1207 Length=20116479 Score = 107 bits (118), Expect = 5e-18 Identities = 163/229 (71%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| ||||| || |||||||| || |||||||||||||| | |||||||| | | || Sbjct 17430744 TCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGATAGGGT 17430803 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || | ||||| || |||||||| || || ||||| || || || || Sbjct 17430804 TCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACC 17430863 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| |||||||| ||| || |||||| |||| || || ||| || || || | Sbjct 17430864 CTCTTTATCCTGAAT-TTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAACCTCAA 17430922 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || || |||||||| || ||||| || |||||| Sbjct 17430923 GTGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTG---CATTTT 17430968 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| || || |||||||| || | |||||||||| || | | Sbjct 13120224 CGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGAC 13120283 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| || || || || ||||||||||| || || ||| || Sbjct 13120284 CGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCC 13120343 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| || || | | || | | || || || | Sbjct 13120344 TCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGA 13120403 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || ||||||||||| ||||| || Sbjct 13120404 GTTATAGTTTTGCCAGTAAGAGTTTTCACGAAAATCTG 13120441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178903217296539