Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq1213 150 2e-31
seq1207 87.8 2e-12
>seq1213
Length=7437389
Score = 150 bits (166), Expect = 2e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | |||||| || | ||| |||||| || |||||||||||||| || ||||| |
Sbjct 1844333 ACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCC 1844274
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || | |||||| || |||||||||| |||||||| || | || | || ||||||
Sbjct 1844273 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844214
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||||||| ||| | || | | || ||| |||| ||||| || | |||||
Sbjct 1844213 GTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1844154
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || ||||| || |||||||| |||||
Sbjct 1844153 GGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118
Score = 150 bits (166), Expect = 2e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||| ||||||| || |||||| || || ||||||||||| || ||||| |
Sbjct 1844789 ACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCC 1844730
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || | |||||| || |||||||||| |||||||| || | || | || ||||||
Sbjct 1844729 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844670
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||||||| ||| | || | | || ||| |||| ||||| || | |||||
Sbjct 1844669 GTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1844610
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || || || || ||||||||||||||
Sbjct 1844609 GGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574
Score = 141 bits (156), Expect = 1e-28
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | |||||| || | ||| |||||| || || ||||||||||| || ||||| |
Sbjct 1844561 ACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCC 1844502
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || | |||||| || |||||||||| |||||||| || | || | || ||||||
Sbjct 1844501 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844442
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||||||| || | || | | || ||| |||| ||||| || | |||||
Sbjct 1844441 GTCCTGGATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1844382
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| ||||| || || || || ||||||||||||||
Sbjct 1844381 GGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346
Score = 140 bits (154), Expect = 4e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
|||||| || | || |||||| || || ||||||||||| || ||||| |||| ||
Sbjct 1837887 CACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1837946
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
| |||||| || |||||||||| |||||||| || | || | || ||||||||||
Sbjct 1837947 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTG 1838006
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||||| ||| | || | | || ||| |||| ||||| || | |||||||| ||
Sbjct 1838007 GATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTT 1838066
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || || || ||||||||||||||
Sbjct 1838067 GCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | |||||| || | ||| |||||| || || ||||||||||| || ||||| |
Sbjct 1838109 ACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCC 1838168
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || | |||||| || |||||||||| |||||||| || | || | || || ||
Sbjct 1838169 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTT 1838228
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| ||||| ||| | | | | || ||| || | || || |||| || ||
Sbjct 1838229 GTCTTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAAT 1838288
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || || || || || || |||||
Sbjct 1838289 AGTCTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 1838324
>seq1207
Length=20116479
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||||| || | | || || || | ||| ||||||||| |||||||||||||
Sbjct 17430737 TGCCTCCTCGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGG 17430796
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|||| || ||| | || || | ||||| || ||||| || | ||| ||||| || | ||
Sbjct 17430797 ATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCG 17430856
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | ||| || ||| || ||| || | || | | | || || | || |
Sbjct 17430857 GTATACCCTCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAA 17430916
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
| || | || || ||||| || || || ||||| || || || |||||||||
Sbjct 17430917 CCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCATTTTG 17430969
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565229801310840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |