Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1209 203 3e-47 seq1213 120 3e-22 seq1207 87.8 2e-12 >seq1209 Length=14622995 Score = 203 bits (224), Expect = 3e-47 Identities = 416/606 (69%), Gaps = 17/606 (3%) Strand=Plus/Minus Query 132869 GTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGG 132928 |||| || | ||| || || || | ||| ||||| ||| || | ||| || |||| | Sbjct 7446628 GTTG-ACAATATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGC 7446570 Query 132929 AAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATA 132988 || | ||||||||||| || | ||| |||||||| || || || ||||||||||| | Sbjct 7446569 TGATCAACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGA 7446510 Query 132989 TGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCT 133048 | | || || || |||||||| ||||| || || || ||||| ||||| || |||| Sbjct 7446509 TAGAAGCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCT 7446450 Query 133049 CGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG- 133107 | || | | ||||| | | || ||||| | || ||||| ||||| |||||| | Sbjct 7446449 CAGCGTATGGGGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGC--TTTCTTAGC 7446392 Query 133108 -ACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GC 133164 || || |||| ||| | | |||||| |||||| ||| | | | ||| | Sbjct 7446391 AACACATGGCAGCGTCTGAACGGCGTTAAACAAA--AAGTCGCGTTCCACTGGATCCTTA 7446334 Query 133165 ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 | |||||| || || || || |||||||| || || | ||| || | ||||| ||| Sbjct 7446333 ATGTAGGTATCAATCAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGC 7446274 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGA--CCA 133282 | |||||||| || || |||||| | || ||||| | | ||| | || | | Sbjct 7446273 ATCCCGTAAAAACAACGAGCCTCGGGAATTTGGACTTCGTTA--CAAAAGTTCAAAGTTA 7446216 Query 133283 GATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAAT 133342 | ||||| || |||||||| || ||||| || ||||| |||| || | ||||||| Sbjct 7446215 GGTTTTCATTAACGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAAT 7446156 Query 133343 GGCGCTCGTTGTCGTTCAAGCGCTCCCAGTC-GCGCGTGTCCTTGGACAGGTCCACCTCC 133401 | || ||| || || | || ||||| || | | | |||||| | || || || ||| Sbjct 7446155 GACGTTCGCCATCATTAAGGCCTTCCCAATCAGTGAG-GTCCTTCGCCAAATCGACTTCC 7446097 Query 133402 TCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACT-CCACATGTCCGAATATTG 133460 || || |||||||| || || | ||||| ||||| | ||| ||| ||||| |||||| Sbjct 7446096 TCAACTGTCCAAAAGGAGGCAACAGCTTTCTTGTA-AAACTCCCAGATGTCATGATATTG 7446038 Query 133461 TATGGG 133466 ||||| Sbjct 7446037 GATGGG 7446032 >seq1213 Length=7437389 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| |||||||| | || || ||| | | Sbjct 1844574 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844633 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || || | | || | || |||| ||||| ||||| ||||| | || || Sbjct 1844634 GACTCGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1844692 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | |||||| || ||| |||| |||| |||||||| ||||||||| Sbjct 1844693 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1844752 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| |||| |||||| | ||||||||| | | ||||| Sbjct 1844753 CATACAGAAGGAGTCGACTCTGCATCTTGTGCTGCGTCTCCGCGGCGG 1844800 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| |||||||| | || || ||| | | Sbjct 1844346 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844405 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || || | | |||| || |||| ||||| ||||| ||||| | || || Sbjct 1844406 GACTCGATTGAGAATG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1844464 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | |||||| || ||| |||| |||| |||||||| ||||||||| Sbjct 1844465 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1844524 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| |||| || || ||||||| ||| Sbjct 1844525 CATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGT 1844561 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| |||||||| | || || ||| | | Sbjct 1838096 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1838037 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | || || | | || | || |||| ||||| ||||| ||||| | || || Sbjct 1838036 GACTCGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1837978 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | |||||| || ||| |||| |||| |||||||| ||||||||| Sbjct 1837977 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1837918 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| |||| || || ||||||| || || | ||||| Sbjct 1837917 CATTCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGCGG 1837870 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || || ||||| || || || || || | || || ||| | | Sbjct 1838324 ATGCAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGT 1838265 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | ||||| | || | || || | |||||||| || ||||| | || || Sbjct 1838264 GACTCGATAGAAAACG-TGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCA 1838206 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | |||||| || ||| |||| |||| |||||||| ||||||||| Sbjct 1838205 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1838146 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| |||| || || ||||||| ||| Sbjct 1838145 CATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGT 1838109 >seq1207 Length=20116479 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 38237 TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296 ||| |||||||| || ||||||||||| || || || ||||| || || | || || || Sbjct 17430972 TAACAAAATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGA 17430913 Query 38297 GGCCACCGA---CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCC 38353 | | | || || || | |||| | |||| ||||| | || |||||||| || || Sbjct 17430912 GCCAAGTGATTCCATCGAG--AACG-TGAAAGCGAAAATTCAGGATAAAGAGGGTATACC 17430856 Query 38354 CGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 | || || || || || || | ||| || || || | || || | ||| ||||| Sbjct 17430855 GCCAGATCAGCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATC 17430796 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||||| || |||||||| |||| || || Sbjct 17430795 CGACTACAATATTCAAAAGGAGTCGACACTTCA 17430763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500165191121280