Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 203 3e-47
seq1213 120 3e-22
seq1207 87.8 2e-12
>seq1209
Length=14622995
Score = 203 bits (224), Expect = 3e-47
Identities = 416/606 (69%), Gaps = 17/606 (3%)
Strand=Plus/Minus
Query 132869 GTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGG 132928
|||| || | ||| || || || | ||| ||||| ||| || | ||| || |||| |
Sbjct 7446628 GTTG-ACAATATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGC 7446570
Query 132929 AAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATA 132988
|| | ||||||||||| || | ||| |||||||| || || || ||||||||||| |
Sbjct 7446569 TGATCAACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGA 7446510
Query 132989 TGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCT 133048
| | || || || |||||||| ||||| || || || ||||| ||||| || ||||
Sbjct 7446509 TAGAAGCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCT 7446450
Query 133049 CGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG- 133107
| || | | ||||| | | || ||||| | || ||||| ||||| |||||| |
Sbjct 7446449 CAGCGTATGGGGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGC--TTTCTTAGC 7446392
Query 133108 -ACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAAC--GC 133164
|| || |||| ||| | | |||||| |||||| ||| | | | ||| |
Sbjct 7446391 AACACATGGCAGCGTCTGAACGGCGTTAAACAAA--AAGTCGCGTTCCACTGGATCCTTA 7446334
Query 133165 ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224
| |||||| || || || || |||||||| || || | ||| || | ||||| |||
Sbjct 7446333 ATGTAGGTATCAATCAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGC 7446274
Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGA--CCA 133282
| |||||||| || || |||||| | || ||||| | | ||| | || | |
Sbjct 7446273 ATCCCGTAAAAACAACGAGCCTCGGGAATTTGGACTTCGTTA--CAAAAGTTCAAAGTTA 7446216
Query 133283 GATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAAT 133342
| ||||| || |||||||| || ||||| || ||||| |||| || | |||||||
Sbjct 7446215 GGTTTTCATTAACGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAAT 7446156
Query 133343 GGCGCTCGTTGTCGTTCAAGCGCTCCCAGTC-GCGCGTGTCCTTGGACAGGTCCACCTCC 133401
| || ||| || || | || ||||| || | | | |||||| | || || || |||
Sbjct 7446155 GACGTTCGCCATCATTAAGGCCTTCCCAATCAGTGAG-GTCCTTCGCCAAATCGACTTCC 7446097
Query 133402 TCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACT-CCACATGTCCGAATATTG 133460
|| || |||||||| || || | ||||| ||||| | ||| ||| ||||| ||||||
Sbjct 7446096 TCAACTGTCCAAAAGGAGGCAACAGCTTTCTTGTA-AAACTCCCAGATGTCATGATATTG 7446038
Query 133461 TATGGG 133466
|||||
Sbjct 7446037 GATGGG 7446032
>seq1213
Length=7437389
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || || || ||||| |||||||| | || || ||| | |
Sbjct 1844574 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844633
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||| | || || | | || | || |||| ||||| ||||| ||||| | || ||
Sbjct 1844634 GACTCGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1844692
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | |||||| || ||| |||| |||| |||||||| |||||||||
Sbjct 1844693 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1844752
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| || ||||| |||| |||||| | ||||||||| | | |||||
Sbjct 1844753 CATACAGAAGGAGTCGACTCTGCATCTTGTGCTGCGTCTCCGCGGCGG 1844800
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || || || ||||| |||||||| | || || ||| | |
Sbjct 1844346 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844405
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||| | || || | | |||| || |||| ||||| ||||| ||||| | || ||
Sbjct 1844406 GACTCGATTGAGAATG-TGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1844464
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | |||||| || ||| |||| |||| |||||||| |||||||||
Sbjct 1844465 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1844524
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||| || ||||| |||| || || ||||||| |||
Sbjct 1844525 CATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGT 1844561
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || || || ||||| |||||||| | || || ||| | |
Sbjct 1838096 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1838037
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||| | || || | | || | || |||| ||||| ||||| ||||| | || ||
Sbjct 1838036 GACTCGATTGAGAATG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCA 1837978
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | |||||| || ||| |||| |||| |||||||| |||||||||
Sbjct 1837977 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1837918
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| || ||||| |||| || || ||||||| || || | |||||
Sbjct 1837917 CATTCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGCGG 1837870
Score = 105 bits (116), Expect = 7e-18
Identities = 155/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| |||||||| || || ||||| || || || || || | || || ||| | |
Sbjct 1838324 ATGCAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGT 1838265
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||| | | ||||| | || | || || | |||||||| || ||||| | || ||
Sbjct 1838264 GACTCGATAGAAAACG-TGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCA 1838206
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | |||||| || ||| |||| |||| |||||||| |||||||||
Sbjct 1838205 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1838146
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||| || ||||| |||| || || ||||||| |||
Sbjct 1838145 CATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGT 1838109
>seq1207
Length=20116479
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 38237 TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296
||| |||||||| || ||||||||||| || || || ||||| || || | || || ||
Sbjct 17430972 TAACAAAATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGA 17430913
Query 38297 GGCCACCGA---CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCC 38353
| | | || || || | |||| | |||| ||||| | || |||||||| || ||
Sbjct 17430912 GCCAAGTGATTCCATCGAG--AACG-TGAAAGCGAAAATTCAGGATAAAGAGGGTATACC 17430856
Query 38354 CGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413
| || || || || || || | ||| || || || | || || | ||| |||||
Sbjct 17430855 GCCAGATCAGCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATC 17430796
Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
||||||||| || |||||||| |||| || ||
Sbjct 17430795 CGACTACAATATTCAAAAGGAGTCGACACTTCA 17430763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500165191121280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |