Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq1210 170 8e-37
seq1208 102 3e-16
seq1209 98.7 4e-15
seq1215 86.0 2e-11
>seq1210
Length=13762452
Score = 170 bits (188), Expect = 8e-37
Identities = 255/359 (71%), Gaps = 6/359 (2%)
Strand=Plus/Minus
Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297
|| || || || || |||| |||||||||||| ||||||||| |||| || ||
Sbjct 7908000 TTCGCCCCCGAGGAGGTTTCGGCTATGGTTCTTAGTAAAATGAAGGAAATTGCCGAGGCC 7907941
Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357
||| |||| || |||||| | || || | ||||| ||||| || |||||||| ||
Sbjct 7907940 TATCTTGGCACTGAAGTTACCCACGCTGTCGTCACTGTGCCCGCCTACTTCAATGACGCT 7907881
Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417
||||| ||||| || |||||||| || |||||||| | | ||| | ||||||||
Sbjct 7907880 CAACGTCAAGCGACCAAAGATGCTGGTGCCATTGCTGGCCTGACTGTGTTGCGAATTATC 7907821
Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477
|||||||| || || ||||| | || ||||| | ||| || |||||| || ||
Sbjct 7907820 AATGAACCAACTGCCGCTGCGATTGCCTATGG-TTTGGATAA--AAAAGATAC---TGAG 7907767
Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537
|| || || | ||||||||| ||||||| || || ||| || | || ||||
Sbjct 7907766 AAGAACATCCTCGTATTTGATCTTGGTGGTGGCACCTTCGATGTCTCCCTCCTGACAATC 7907707
Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596
|| |||| || |||||||| || |||| |||||| || ||||| || ||||||||
Sbjct 7907706 GACAATGGTGTGTTTGAAGTTGTCGCGACCAGTGGTGACACCCATCTTGGTGGTGAAGA 7907648
>seq1208
Length=17597482
Score = 102 bits (112), Expect = 3e-16
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381
|| || || |||||||| || |||||||||||| | || ||||| || || ||||||||
Sbjct 13302826 GCGGTTATCACTGTTCCTGCCTATTTCAATGATTCCCAGCGGCAGGCTACCAAAGATGCT 13302885
Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441
|| || || || || | ||||||||||| | || ||||||||||| || || |||||
Sbjct 13302886 GGTCAGATAGCCGGCCTGAATGTTCTTCGTGTCATCAATGAACCTACTGCTGCGGCTCTC 13302945
Query 451442 GCATATGGACT 451452
|| || || ||
Sbjct 13302946 GCTTACGGTCT 13302956
>seq1209
Length=14622995
Score = 98.7 bits (108), Expect = 4e-15
Identities = 124/168 (74%), Gaps = 7/168 (4%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|| || ||||| || |||||||| || || ||||||||||| ||||| | |||||
Sbjct 14457407 GTCACGGATGCGGTGATTACTGTGCCTGCGTATTTCAATGACAACCAACGAAATGCAACA 14457348
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432
| |||||||| | || || ||||||||||| || || | || ||||| || ||||||
Sbjct 14457347 ATAGATGCAGCGAAAATGGCCGGTTTAAATGTGCTGCGTCTCATCAATGAGCCGACAGCA 14457288
Query 451433 GCTGCTCTAGCA-----TATGGACTAGGAAAATC-AAAAGAAACAGAA 451474
||| | | ||| ||||||| ||||||| | ||||| |||| ||
Sbjct 14457287 GCTACCATTGCATACGGTATGGAC-AGGAAAAGCGAAAAGCAACACAA 14457241
Score = 98.7 bits (108), Expect = 4e-15
Identities = 124/168 (74%), Gaps = 7/168 (4%)
Strand=Plus/Plus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|| || ||||| || |||||||| || || ||||||||||| ||||| | |||||
Sbjct 14534523 GTCACGGATGCGGTGATTACTGTGCCTGCGTATTTCAATGACAACCAACGAAATGCAACA 14534582
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432
| |||||||| | || || ||||||||||| || || | || ||||| || ||||||
Sbjct 14534583 ATAGATGCAGCGAAAATGGCCGGTTTAAATGTGCTGCGTCTCATCAATGAGCCGACAGCA 14534642
Query 451433 GCTGCTCTAGCA-----TATGGACTAGGAAAATC-AAAAGAAACAGAA 451474
||| | | ||| ||||||| ||||||| | ||||| |||| ||
Sbjct 14534643 GCTACCATTGCATACGGTATGGAC-AGGAAAAGCGAAAAGCAACACAA 14534689
>seq1215
Length=4267853
Score = 86.0 bits (94), Expect = 2e-11
Identities = 227/347 (65%), Gaps = 0/347 (0%)
Strand=Plus/Minus
Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150
|||||||| | |||||| || ||| | ||||| ||| | ||| || || ||||||
Sbjct 3203314 AACACAGTTTTTGATGCAAAGCGTCTGATTGGACGTCGTTTTGACGACGAGGAAGTACAA 3203255
Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAA 451210
| || | | | | || | | | || || || | ||| ||||| | || |
Sbjct 3203254 AGTGACATAGAGTACTGGCCATTCAAAGTGGTGAACTGGAGAGGGAAGCCTAAAATCGAG 3203195
Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270
| || ||| ||||| || | | ||| | ||| || || ||||||| ||||| ||
Sbjct 3203194 GCAACATATTGTGGTGAGACAAGCAGTTTCGTTCCAGAGGAGATTTCATTCATGGTGCTG 3203135
Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330
|||||||| || || || || ||| | || || || ||||||||||||
Sbjct 3203134 CTAAAAATGAAGGAGACGGCGGAGGCGTATTTGGGAAAGAGGGTGACAGATGCAGTAATT 3203075
Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390
||||| || || || |||||||| || ||||| ||||| | || |||||| | |
Sbjct 3203074 ACTGTACCTGCCTACTTCAATGACAGTCAGCGGCAGGCAACGATGGACGCAGGAAAAACA 3203015
Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437
|| ||||||||| | | || || | ||||||| | |||| |||
Sbjct 3203014 GCGGGTTTAAATATGTTGCGCATAGTCAATGAACTATCGGCAGTTGC 3202968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975687592993436
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |