Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1210 170 8e-37 seq1208 102 3e-16 seq1209 98.7 4e-15 seq1215 86.0 2e-11 >seq1210 Length=13762452 Score = 170 bits (188), Expect = 8e-37 Identities = 255/359 (71%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 || || || || || |||| |||||||||||| ||||||||| |||| || || Sbjct 7908000 TTCGCCCCCGAGGAGGTTTCGGCTATGGTTCTTAGTAAAATGAAGGAAATTGCCGAGGCC 7907941 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| |||| || |||||| | || || | ||||| ||||| || |||||||| || Sbjct 7907940 TATCTTGGCACTGAAGTTACCCACGCTGTCGTCACTGTGCCCGCCTACTTCAATGACGCT 7907881 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 ||||| ||||| || |||||||| || |||||||| | | ||| | |||||||| Sbjct 7907880 CAACGTCAAGCGACCAAAGATGCTGGTGCCATTGCTGGCCTGACTGTGTTGCGAATTATC 7907821 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 |||||||| || || ||||| | || ||||| | ||| || |||||| || || Sbjct 7907820 AATGAACCAACTGCCGCTGCGATTGCCTATGG-TTTGGATAA--AAAAGATAC---TGAG 7907767 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 || || || | ||||||||| ||||||| || || ||| || | || |||| Sbjct 7907766 AAGAACATCCTCGTATTTGATCTTGGTGGTGGCACCTTCGATGTCTCCCTCCTGACAATC 7907707 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || |||| || |||||||| || |||| |||||| || ||||| || |||||||| Sbjct 7907706 GACAATGGTGTGTTTGAAGTTGTCGCGACCAGTGGTGACACCCATCTTGGTGGTGAAGA 7907648 >seq1208 Length=17597482 Score = 102 bits (112), Expect = 3e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || |||||||| || |||||||||||| | || ||||| || || |||||||| Sbjct 13302826 GCGGTTATCACTGTTCCTGCCTATTTCAATGATTCCCAGCGGCAGGCTACCAAAGATGCT 13302885 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || || || || || | ||||||||||| | || ||||||||||| || || ||||| Sbjct 13302886 GGTCAGATAGCCGGCCTGAATGTTCTTCGTGTCATCAATGAACCTACTGCTGCGGCTCTC 13302945 Query 451442 GCATATGGACT 451452 || || || || Sbjct 13302946 GCTTACGGTCT 13302956 >seq1209 Length=14622995 Score = 98.7 bits (108), Expect = 4e-15 Identities = 124/168 (74%), Gaps = 7/168 (4%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || || ||||| || |||||||| || || ||||||||||| ||||| | ||||| Sbjct 14457407 GTCACGGATGCGGTGATTACTGTGCCTGCGTATTTCAATGACAACCAACGAAATGCAACA 14457348 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 | |||||||| | || || ||||||||||| || || | || ||||| || |||||| Sbjct 14457347 ATAGATGCAGCGAAAATGGCCGGTTTAAATGTGCTGCGTCTCATCAATGAGCCGACAGCA 14457288 Query 451433 GCTGCTCTAGCA-----TATGGACTAGGAAAATC-AAAAGAAACAGAA 451474 ||| | | ||| ||||||| ||||||| | ||||| |||| || Sbjct 14457287 GCTACCATTGCATACGGTATGGAC-AGGAAAAGCGAAAAGCAACACAA 14457241 Score = 98.7 bits (108), Expect = 4e-15 Identities = 124/168 (74%), Gaps = 7/168 (4%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || || ||||| || |||||||| || || ||||||||||| ||||| | ||||| Sbjct 14534523 GTCACGGATGCGGTGATTACTGTGCCTGCGTATTTCAATGACAACCAACGAAATGCAACA 14534582 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 | |||||||| | || || ||||||||||| || || | || ||||| || |||||| Sbjct 14534583 ATAGATGCAGCGAAAATGGCCGGTTTAAATGTGCTGCGTCTCATCAATGAGCCGACAGCA 14534642 Query 451433 GCTGCTCTAGCA-----TATGGACTAGGAAAATC-AAAAGAAACAGAA 451474 ||| | | ||| ||||||| ||||||| | ||||| |||| || Sbjct 14534643 GCTACCATTGCATACGGTATGGAC-AGGAAAAGCGAAAAGCAACACAA 14534689 >seq1215 Length=4267853 Score = 86.0 bits (94), Expect = 2e-11 Identities = 227/347 (65%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 |||||||| | |||||| || ||| | ||||| ||| | ||| || || |||||| Sbjct 3203314 AACACAGTTTTTGATGCAAAGCGTCTGATTGGACGTCGTTTTGACGACGAGGAAGTACAA 3203255 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAA 451210 | || | | | | || | | | || || || | ||| ||||| | || | Sbjct 3203254 AGTGACATAGAGTACTGGCCATTCAAAGTGGTGAACTGGAGAGGGAAGCCTAAAATCGAG 3203195 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 | || ||| ||||| || | | ||| | ||| || || ||||||| ||||| || Sbjct 3203194 GCAACATATTGTGGTGAGACAAGCAGTTTCGTTCCAGAGGAGATTTCATTCATGGTGCTG 3203135 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 |||||||| || || || || ||| | || || || |||||||||||| Sbjct 3203134 CTAAAAATGAAGGAGACGGCGGAGGCGTATTTGGGAAAGAGGGTGACAGATGCAGTAATT 3203075 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 ||||| || || || |||||||| || ||||| ||||| | || |||||| | | Sbjct 3203074 ACTGTACCTGCCTACTTCAATGACAGTCAGCGGCAGGCAACGATGGACGCAGGAAAAACA 3203015 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 || ||||||||| | | || || | ||||||| | |||| ||| Sbjct 3203014 GCGGGTTTAAATATGTTGCGCATAGTCAATGAACTATCGGCAGTTGC 3202968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975687592993436