Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1210 172 4e-37 seq1211 150 1e-30 seq1208 114 1e-19 seq1209 87.8 1e-11 >seq1210 Length=13762452 Score = 172 bits (190), Expect = 4e-37 Identities = 371/549 (68%), Gaps = 8/549 (1%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 ||||| ||| |||||||| | |||||| | || | ||| | || | |||| || Sbjct 7907723 ACATCGAAGGTGCCACCACCAAGATCAAATACGAGGATGTTCTTCTCAGTATCTT---TT 7907779 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 ||||| | |||||| |||| ||||| |||||||||||||| ||||||| ||| ||| | Sbjct 7907780 TTATCCAAACCATAGGCAATCGCAGCGGCAGTTGGTTCATTGATAATTCGCAACACAGTC 7907839 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || |||||||| || |||||||| || ||||| | ||| | || || || || || Sbjct 7907840 AGGCCAGCAATGGCACCAGCATCTTTGGTCGCTTGACGTTGAGCGTCATTGAAGTAGGCG 7907899 Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTC 518347 || ||||| | || || | || ||||| | |||| ||| || || ||| ||| Sbjct 7907900 GGCACAGTGACGACAGCGTGGGTAACTTCAGTGCCAAGATAGGCCTCGGCAATTTCCTTC 7907959 Query 518348 ATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCA-TTTTG 518406 |||||||| | || ||| | |||| | || |||| | ||| ||| | Sbjct 7907960 ATTTTACTAAGAACCATAGCCGAAACCTCCTCGGGGGCGAAGCCCTTCTCCTCACTCCCT 7908019 Query 518407 ATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTT 518466 | ||| |||| | ||| |||||||| || || || || || || | ||| Sbjct 7908020 ACTTGA-ACTTTCATATACGGTTTATTGTTCTTGTTTATCACCTTGAACGGATAACGTTT 7908078 Query 518467 CATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAA 518526 ||||| || ||| || || | | |||| | |||||| | |||||| ||||| || Sbjct 7908079 AATATCACCCTGCACATCTTTATCGTCATAATCACGACCAATGAGTCGTTTGGCATCGAA 7908138 Query 518527 AATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT- 518585 | |||||| | ||||| | ||||| ||| || ||||| |||||||| ||| Sbjct 7908139 CAAAGTATTCTTAGGATTTGAGGTCAATTGATTTTTTGCCGCATCACCAATCAGTCGTTC 7908198 Query 518586 -CTGTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 518643 | || | | |||| |||||| ||||| ||| | ||||| ||||| ||||| || || Sbjct 7908199 ACCATCACCAGAGAATGCAACATAAGATGGTGTTATACGATTGCCTTGGTCATTTGCGAT 7908258 Query 518644 AATTTCAAC 518652 |||||||| Sbjct 7908259 GATTTCAAC 7908267 >seq1211 Length=11859842 Score = 150 bits (166), Expect = 1e-30 Identities = 364/549 (66%), Gaps = 4/549 (1%) Strand=Plus/Plus Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225 |||| || | |||||| || | |||||| || || || || |||| || | || || | Sbjct 8946088 TTTTGTCCAAACCATATGCGATAGCAGCTGCCGTGGGCTCGTTAACGATACGCAGCACGT 8946147 Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285 | | ||| |||| | | ||||||||| | || || |||| ||| ||| || || ||| Sbjct 8946148 TTAAACCCGCAACTTTCCCTGCATCTATCGTCGCCTGTCGTTGCCTATCATTGAAGCATG 8946207 Query 518286 CAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTT 518345 | || || ||| | || ||||| || |||| | | || | | | || ||| || | || Sbjct 8946208 CCGGTACTGTAGTTACTGCATCTGTCACTTTTGTGCCCAAAAACGCTTCTGCTGTCTCTT 8946267 Query 518346 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAAT--ATTGCTTGGATTCATT 518403 |||| || | | ||| || || || | ||||| ||| | | ||| | ||||| Sbjct 8946268 TCATCTTCAGCAGCACCATGGACGAGATCTCTTCTGC--AATGAACTTCTTTGTCTCATT 8946325 Query 518404 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTA 518463 || | ||| ||| | ||||| || ||| | ||||| |||||||| | Sbjct 8946326 AAGAAACTCTACCCCAATCTTCGGTTTCCCTTCAGAATTTACCACTTTGAATGGCCAATG 8946385 Query 518464 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 518523 || | || ||| || | ||||| | | | || || || || ||||| || Sbjct 8946386 CCTCTTGTCGTCTTGGACTTCTACATCATTGATTTGGCGTCCGATCAAACGCTTTGCGTC 8946445 Query 518524 AAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 518583 ||||| ||||| ||||| || | | |||||| | || || || || || | ||| | Sbjct 8946446 AAAAACCGTATTAGTTGGGTTTAAAGTAGCTTGGTTCTTTGCAGCCTCACCGACGAGACG 8946505 Query 518584 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 518643 ||| | ||||| || | ||||| || ||| |||| ||| |||||||| ||||| Sbjct 8946506 CTCTTTATCTGTGAAGGCTACATAACCGGGTGTTATGCGGAGACCCTGATCATTGGCAAT 8946565 Query 518644 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 518703 |||||| || || ||||| || | ||||| || || ||| ||||| ||||| ||||| Sbjct 8946566 AATTTCCACCTTGCCATTCTGAAAAACACCGACGCACGAAAAGGTTGTCCCTAAGTCAAT 8946625 Query 518704 ACCAATAGC 518712 ||| || || Sbjct 8946626 ACCGATGGC 8946634 >seq1208 Length=17597482 Score = 114 bits (126), Expect = 1e-19 Identities = 352/540 (65%), Gaps = 6/540 (1%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || |||| ||||| || ||||| ||||| || | | || ||||| | ||| || Sbjct 17581185 CCGTATGCAATGGCAGCCGCTGTTGGCTCATTGATGAGCCGCAGCACATTTAAACCGGCT 17581244 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| || | || ||| ||||||| |||||||| |||| || || || || ||||| Sbjct 17581245 ATTTTTGCCGCGTCTATAGTGGCCTGTCTTTGGCCCACGTTGAAGTACGCTGGCACAGTG 17581304 Query 518297 ATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACT 518355 || || ||||| || || |||| | | | || | ||||| | ||||| || | Sbjct 17581305 ATTACCGCATCTGTGACCTTCTCTTCTAGG-TACGTCTCCGCCGTCTCCTTCATCTTCGT 17581363 Query 518356 TAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATAC 518415 | | ||| | || || || || | |||||| | |||| | ||| Sbjct 17581364 CAGCACCATGGCCGAGATCTGCTCCGCAACGATTTGCTTTGTTTCACCACAGTGCTGTAC 17581423 Query 518416 TTCAAAATATGGTTTA--TTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCT 518473 ||| | | ||| ||| || | || || |||||||| || ||||||| ||||||||| Sbjct 17581424 TTCGATTTTTGGCTTACCTTTCGAA--TTTATAACTTTGAAGGGCCAGTGTTTCATATCG 17581481 Query 518474 GATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTA 518533 || || || ||| ||||| | || || | ||||| || | |||| ||| Sbjct 17581482 CTCTGCACTTCTTCGTCGTTAAAGCTGCGTCCGATCAGACGTTTCACACCGAAAACCGTA 17581541 Query 518534 TTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCT 518593 ||||| ||||| | || || || | | | || || || || || || || | | || Sbjct 17581542 TTGGTCGGATTCACAGCGGCCTGGTTTATTGCGGCTTCACCGATAAGGCGTCCCTTGTCA 17581601 Query 518594 GTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACT 518653 || || | |||| | || ||||||||||| || ||||| || || || || | || Sbjct 17581602 GTGAAGGCAACACAACTCGGGGTTGTGCGATTGCCCTGATCGTTGGCTATGATCTTCACC 17581661 Query 518654 TTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 || ||||| | ||||| |||||| || ||||| || || || || || |||||| Sbjct 17581662 CTATTTTTTTGGAAAACACCCACACAAGAGAAGGTTGTACCCAAGTCGATGCCGATAGCA 17581721 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 518170 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 518229 ||| ||||| || || | ||| |||||||| |||||||| || | | | |||||| || Sbjct 13302960 ATCCAGACCGTAAGCGAGAGCCGCAGCAGTAGGTTCATTGATGACACGAAGAACATTCAG 13302901 Query 518230 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 518289 || || || || |||||||| || || || | || ||||| || ||||| ||||| Sbjct 13302900 GCCGGCTATCTGACCAGCATCTTTGGTAGCCTGCCGCTGGGAATCATTGAAATAGGCAGG 13302841 Query 518290 AACAGTAATAACGGC 518304 |||||| ||||| || Sbjct 13302840 AACAGTGATAACCGC 13302826 >seq1209 Length=14622995 Score = 87.8 bits (96), Expect = 1e-11 Identities = 130/183 (71%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 518531 GTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC 518590 |||||||| || || || ||| | || | | | || || |||||||| || | ||| Sbjct 14457598 GTATTGGTAGGGTTCATAGCAACCTGGTTTGTTGCGGCTTCTCCAATGAGGCGATCTCA- 14457656 Query 518591 TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCA 518650 ||||| || | |||| | || |||||||| ||||||||||| || || || ||||| Sbjct 14457657 TCTGTGAAGGCAACAGAACTCGGCGTTGTGCGGTTACCTTGATCGTTGGCTATGATTTCC 14457716 Query 518651 ACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710 | | ||||| | ||||| |||||| || ||||| || || ||||| |||||| Sbjct 14457717 ATCCTGTTGTTTTGGAAAACACCGACACAAGAGAAGGTTGTGCCCAAGTCAATGCCAATA 14457776 Query 518711 GCA 518713 ||| Sbjct 14457777 GCA 14457779 Score = 87.8 bits (96), Expect = 1e-11 Identities = 130/183 (71%), Gaps = 1/183 (1%) Strand=Plus/Minus Query 518531 GTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC 518590 |||||||| || || || ||| | || | | | || || |||||||| || | ||| Sbjct 14534332 GTATTGGTAGGGTTCATAGCAACCTGGTTTGTTGCGGCTTCTCCAATGAGGCGATCTCA- 14534274 Query 518591 TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCA 518650 ||||| || | |||| | || |||||||| ||||||||||| || || || ||||| Sbjct 14534273 TCTGTGAAGGCAACAGAACTCGGCGTTGTGCGGTTACCTTGATCGTTGGCTATGATTTCC 14534214 Query 518651 ACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710 | | ||||| | ||||| |||||| || ||||| || || ||||| |||||| Sbjct 14534213 ATCCTGTTGTTTTGGAAAACACCGACACAAGAGAAGGTTGTGCCCAAGTCAATGCCAATA 14534154 Query 518711 GCA 518713 ||| Sbjct 14534153 GCA 14534151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780762008451202