Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq1210 172 4e-37
seq1211 150 1e-30
seq1208 114 1e-19
seq1209 87.8 1e-11
>seq1210
Length=13762452
Score = 172 bits (190), Expect = 4e-37
Identities = 371/549 (68%), Gaps = 8/549 (1%)
Strand=Plus/Plus
Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167
||||| ||| |||||||| | |||||| | || | ||| | || | |||| ||
Sbjct 7907723 ACATCGAAGGTGCCACCACCAAGATCAAATACGAGGATGTTCTTCTCAGTATCTT---TT 7907779
Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227
||||| | |||||| |||| ||||| |||||||||||||| ||||||| ||| ||| |
Sbjct 7907780 TTATCCAAACCATAGGCAATCGCAGCGGCAGTTGGTTCATTGATAATTCGCAACACAGTC 7907839
Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287
|| |||||||| || |||||||| || ||||| | ||| | || || || || ||
Sbjct 7907840 AGGCCAGCAATGGCACCAGCATCTTTGGTCGCTTGACGTTGAGCGTCATTGAAGTAGGCG 7907899
Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTC 518347
|| ||||| | || || | || ||||| | |||| ||| || || ||| |||
Sbjct 7907900 GGCACAGTGACGACAGCGTGGGTAACTTCAGTGCCAAGATAGGCCTCGGCAATTTCCTTC 7907959
Query 518348 ATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCA-TTTTG 518406
|||||||| | || ||| | |||| | || |||| | ||| ||| |
Sbjct 7907960 ATTTTACTAAGAACCATAGCCGAAACCTCCTCGGGGGCGAAGCCCTTCTCCTCACTCCCT 7908019
Query 518407 ATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTT 518466
| ||| |||| | ||| |||||||| || || || || || || | |||
Sbjct 7908020 ACTTGA-ACTTTCATATACGGTTTATTGTTCTTGTTTATCACCTTGAACGGATAACGTTT 7908078
Query 518467 CATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAA 518526
||||| || ||| || || | | |||| | |||||| | |||||| ||||| ||
Sbjct 7908079 AATATCACCCTGCACATCTTTATCGTCATAATCACGACCAATGAGTCGTTTGGCATCGAA 7908138
Query 518527 AATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT- 518585
| |||||| | ||||| | ||||| ||| || ||||| |||||||| |||
Sbjct 7908139 CAAAGTATTCTTAGGATTTGAGGTCAATTGATTTTTTGCCGCATCACCAATCAGTCGTTC 7908198
Query 518586 -CTGTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 518643
| || | | |||| |||||| ||||| ||| | ||||| ||||| ||||| || ||
Sbjct 7908199 ACCATCACCAGAGAATGCAACATAAGATGGTGTTATACGATTGCCTTGGTCATTTGCGAT 7908258
Query 518644 AATTTCAAC 518652
||||||||
Sbjct 7908259 GATTTCAAC 7908267
>seq1211
Length=11859842
Score = 150 bits (166), Expect = 1e-30
Identities = 364/549 (66%), Gaps = 4/549 (1%)
Strand=Plus/Plus
Query 518166 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 518225
|||| || | |||||| || | |||||| || || || || |||| || | || || |
Sbjct 8946088 TTTTGTCCAAACCATATGCGATAGCAGCTGCCGTGGGCTCGTTAACGATACGCAGCACGT 8946147
Query 518226 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 518285
| | ||| |||| | | ||||||||| | || || |||| ||| ||| || || |||
Sbjct 8946148 TTAAACCCGCAACTTTCCCTGCATCTATCGTCGCCTGTCGTTGCCTATCATTGAAGCATG 8946207
Query 518286 CAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTT 518345
| || || ||| | || ||||| || |||| | | || | | | || ||| || | ||
Sbjct 8946208 CCGGTACTGTAGTTACTGCATCTGTCACTTTTGTGCCCAAAAACGCTTCTGCTGTCTCTT 8946267
Query 518346 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAAT--ATTGCTTGGATTCATT 518403
|||| || | | ||| || || || | ||||| ||| | | ||| | |||||
Sbjct 8946268 TCATCTTCAGCAGCACCATGGACGAGATCTCTTCTGC--AATGAACTTCTTTGTCTCATT 8946325
Query 518404 TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTA 518463
|| | ||| ||| | ||||| || ||| | ||||| |||||||| |
Sbjct 8946326 AAGAAACTCTACCCCAATCTTCGGTTTCCCTTCAGAATTTACCACTTTGAATGGCCAATG 8946385
Query 518464 TTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 518523
|| | || ||| || | ||||| | | | || || || || ||||| ||
Sbjct 8946386 CCTCTTGTCGTCTTGGACTTCTACATCATTGATTTGGCGTCCGATCAAACGCTTTGCGTC 8946445
Query 518524 AAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATG 518583
||||| ||||| ||||| || | | |||||| | || || || || || | ||| |
Sbjct 8946446 AAAAACCGTATTAGTTGGGTTTAAAGTAGCTTGGTTCTTTGCAGCCTCACCGACGAGACG 8946505
Query 518584 TTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 518643
||| | ||||| || | ||||| || ||| |||| ||| |||||||| |||||
Sbjct 8946506 CTCTTTATCTGTGAAGGCTACATAACCGGGTGTTATGCGGAGACCCTGATCATTGGCAAT 8946565
Query 518644 AATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAAT 518703
|||||| || || ||||| || | ||||| || || ||| ||||| ||||| |||||
Sbjct 8946566 AATTTCCACCTTGCCATTCTGAAAAACACCGACGCACGAAAAGGTTGTCCCTAAGTCAAT 8946625
Query 518704 ACCAATAGC 518712
||| || ||
Sbjct 8946626 ACCGATGGC 8946634
>seq1208
Length=17597482
Score = 114 bits (126), Expect = 1e-19
Identities = 352/540 (65%), Gaps = 6/540 (1%)
Strand=Plus/Plus
Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236
|| || |||| ||||| || ||||| ||||| || | | || ||||| | ||| ||
Sbjct 17581185 CCGTATGCAATGGCAGCCGCTGTTGGCTCATTGATGAGCCGCAGCACATTTAAACCGGCT 17581244
Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296
||| || | || ||| ||||||| |||||||| |||| || || || || |||||
Sbjct 17581245 ATTTTTGCCGCGTCTATAGTGGCCTGTCTTTGGCCCACGTTGAAGTACGCTGGCACAGTG 17581304
Query 518297 ATAACGGCATCAGTTAC-TTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACT 518355
|| || ||||| || || |||| | | | || | ||||| | ||||| || |
Sbjct 17581305 ATTACCGCATCTGTGACCTTCTCTTCTAGG-TACGTCTCCGCCGTCTCCTTCATCTTCGT 17581363
Query 518356 TAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATAC 518415
| | ||| | || || || || | |||||| | |||| | |||
Sbjct 17581364 CAGCACCATGGCCGAGATCTGCTCCGCAACGATTTGCTTTGTTTCACCACAGTGCTGTAC 17581423
Query 518416 TTCAAAATATGGTTTA--TTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCT 518473
||| | | ||| ||| || | || || |||||||| || ||||||| |||||||||
Sbjct 17581424 TTCGATTTTTGGCTTACCTTTCGAA--TTTATAACTTTGAAGGGCCAGTGTTTCATATCG 17581481
Query 518474 GATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTA 518533
|| || || ||| ||||| | || || | ||||| || | |||| |||
Sbjct 17581482 CTCTGCACTTCTTCGTCGTTAAAGCTGCGTCCGATCAGACGTTTCACACCGAAAACCGTA 17581541
Query 518534 TTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCT 518593
||||| ||||| | || || || | | | || || || || || || || | | ||
Sbjct 17581542 TTGGTCGGATTCACAGCGGCCTGGTTTATTGCGGCTTCACCGATAAGGCGTCCCTTGTCA 17581601
Query 518594 GTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACT 518653
|| || | |||| | || ||||||||||| || ||||| || || || || | ||
Sbjct 17581602 GTGAAGGCAACACAACTCGGGGTTGTGCGATTGCCCTGATCGTTGGCTATGATCTTCACC 17581661
Query 518654 TTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713
|| ||||| | ||||| |||||| || ||||| || || || || || ||||||
Sbjct 17581662 CTATTTTTTTGGAAAACACCCACACAAGAGAAGGTTGTACCCAAGTCGATGCCGATAGCA 17581721
Score = 86.0 bits (94), Expect = 5e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 518170 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 518229
||| ||||| || || | ||| |||||||| |||||||| || | | | |||||| ||
Sbjct 13302960 ATCCAGACCGTAAGCGAGAGCCGCAGCAGTAGGTTCATTGATGACACGAAGAACATTCAG 13302901
Query 518230 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 518289
|| || || || |||||||| || || || | || ||||| || ||||| |||||
Sbjct 13302900 GCCGGCTATCTGACCAGCATCTTTGGTAGCCTGCCGCTGGGAATCATTGAAATAGGCAGG 13302841
Query 518290 AACAGTAATAACGGC 518304
|||||| ||||| ||
Sbjct 13302840 AACAGTGATAACCGC 13302826
>seq1209
Length=14622995
Score = 87.8 bits (96), Expect = 1e-11
Identities = 130/183 (71%), Gaps = 1/183 (1%)
Strand=Plus/Plus
Query 518531 GTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC 518590
|||||||| || || || ||| | || | | | || || |||||||| || | |||
Sbjct 14457598 GTATTGGTAGGGTTCATAGCAACCTGGTTTGTTGCGGCTTCTCCAATGAGGCGATCTCA- 14457656
Query 518591 TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCA 518650
||||| || | |||| | || |||||||| ||||||||||| || || || |||||
Sbjct 14457657 TCTGTGAAGGCAACAGAACTCGGCGTTGTGCGGTTACCTTGATCGTTGGCTATGATTTCC 14457716
Query 518651 ACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710
| | ||||| | ||||| |||||| || ||||| || || ||||| ||||||
Sbjct 14457717 ATCCTGTTGTTTTGGAAAACACCGACACAAGAGAAGGTTGTGCCCAAGTCAATGCCAATA 14457776
Query 518711 GCA 518713
|||
Sbjct 14457777 GCA 14457779
Score = 87.8 bits (96), Expect = 1e-11
Identities = 130/183 (71%), Gaps = 1/183 (1%)
Strand=Plus/Minus
Query 518531 GTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC 518590
|||||||| || || || ||| | || | | | || || |||||||| || | |||
Sbjct 14534332 GTATTGGTAGGGTTCATAGCAACCTGGTTTGTTGCGGCTTCTCCAATGAGGCGATCTCA- 14534274
Query 518591 TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCA 518650
||||| || | |||| | || |||||||| ||||||||||| || || || |||||
Sbjct 14534273 TCTGTGAAGGCAACAGAACTCGGCGTTGTGCGGTTACCTTGATCGTTGGCTATGATTTCC 14534214
Query 518651 ACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710
| | ||||| | ||||| |||||| || ||||| || || ||||| ||||||
Sbjct 14534213 ATCCTGTTGTTTTGGAAAACACCGACACAAGAGAAGGTTGTGCCCAAGTCAATGCCAATA 14534154
Query 518711 GCA 518713
|||
Sbjct 14534153 GCA 14534151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780762008451202
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