Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1207 134 2e-26 seq1209 120 4e-22 seq1211 87.8 2e-12 >seq1207 Length=20116479 Score = 134 bits (148), Expect = 2e-26 Identities = 424/648 (65%), Gaps = 23/648 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||||| ||||| ||||| ||| | ||||| |||||||| || ||| ||||| ||| | Sbjct 7938716 CCCCAGTATATGTTTATGCGCGTCTCTATCGGCATCCATGGTGAGGATCTTGATGCTGCT 7938775 Query 111672 TTGGAGACATACGACAAGATGTCCC----GTGGTATGTTCATCCACGCAACACCAACCCT 111727 | ||||| ||| | |||||| ||||| |||||| || |||| || || Sbjct 7938776 ATTGAGACGTACAATCTCATGTCCGAAAAGTGGTTGGTTCAT----GCTTCACCCACTCT 7938831 Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787 || || ||||| || || | || || |||||||| || || | || | | || || Sbjct 7938832 TTTTAATGCTGGGACGCCTAACCCTCAGATGTCCAGCTGCTTTTTGCTTACGATGAAAGA 7938891 Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847 || ||| | ||||| || | || |||| ||||||| | |||||||| | || Sbjct 7938892 TGACAGTATCGAGGGCATATATGATACGCTCAAACAATGTGCACTTATCTCAAAAAGTGC 7938951 Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907 |||||| || || | | | ||| | || | || || || || || Sbjct 7938952 TGGTGGAATTGGTCTCAATGTTCATTGTATCCGGAGTAAGGGCACTTTCATCGCTGGGAC 7939011 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 ||||| | || | ||| || | || |||||||| || || ||| || || || || Sbjct 7939012 CAATGGCGAGTCCAACGGTCTTGTGCCGATGCTTCGGGTCTTCAACAGTACTGCTCGGTA 7939071 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 ||| | || | || ||| | | || | | || | ||||| || || || Sbjct 7939072 TGTTGATCAGGGGGGCAATAAGCGACCC---GGTGCCTTTGCCATTTATCTCGAACCGTG 7939128 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 ||| ||||| | || |||| | || || || ||| |||| ||||| || || Sbjct 7939129 GCATCCGGATGTGCTGCAGTTTGTGGAATTACGGAAGAACACTGGTGCCGAGGAAGCTCG 7939188 Query 112082 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 ||| || ||||| ||| || || |||||||| ||||| ||||||||| | ||||| | Sbjct 7939189 -TGCGCGAGATCTTTTCCTTGCACTTTGGATTCCGGATCTATTCATGAAGCGTGTTGAAG 7939247 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAG-AC-AAGGCACCCGGTCTCTCCGATGCCGT 112198 ||||| ||| | || | | | || || || || |||||||| | || | Sbjct 7939248 CAGGTGGCCCATGGAC-CTTTATGGACCCCCACGAATGC-CCCGGTCTTGCTGACTCTTG 7939305 Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG 112246 ||| ||||| |||||| | |||||||||||||||||| |||| |||| Sbjct 7939306 GGGGGAGGAATTTGAAACGCTCTACACAAAGTACGAGTTAGAAGGTCG 7939353 >seq1209 Length=14622995 Score = 120 bits (132), Expect = 4e-22 Identities = 176/244 (72%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 102093 TTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 102152 ||| | ||| | || || | |||||| || |||||||| ||||||||| | | |||| Sbjct 7446362 TTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGG 7446421 Query 102153 TTTG---ATAC-AAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208 ||| ||| |||| | | | | |||||||| || | ||||| || |||||| Sbjct 7446422 ATTGCAAATAGGAAAGCCCCATAC----GCTGAGCGGCTAGTGGCATTCGCTGCTGTTGA 7446477 Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCA 102267 || | ||||| |||||||| || ||| |||| | ||||||||||||||| ||||||| Sbjct 7446478 AGGCGTTTTCTTTTCTGGTTCATT-TGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCA 7446536 Query 102268 TGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGT 102327 ||||||| ||| |||| ||||||| | ||| || || || || |||||| || | Sbjct 7446537 TGCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATT 7446596 Query 102328 TTGC 102331 |||| Sbjct 7446597 TTGC 7446600 >seq1211 Length=11859842 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 176891 GCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCA 176950 || ||||||||||| || || || |||||||| ||||| ||| | || || ||| Sbjct 3461366 GCTTCACGAACATTGAGCAGTTTACCTCGCAGAGGGAAAACACCATAGCGGTCACGTCCA 3461425 Query 176951 ACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGT 177010 ||||| ||||| || || || || | ||| || ||||| ||||| || | |||||| Sbjct 3461426 ACCACTCCAAGACCAGCCACGGCCAGAGATTTGGCTGAATCCCCCTCGGTGAGGATGAGG 3461485 Query 177011 GTACACT--TGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATAC 177068 || || | ||| | ||| | ||| ||||| | ||| ||||| ||||| || ||||| | Sbjct 3461486 GTGCAGTGCTGCGA-ATTCT-TCGTCCCCGCGTCGTTAGCATCGTCCAACTTTGGAATCC 3461543 Query 177069 C 177069 | Sbjct 3461544 C 3461544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620732956956240