Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 134 2e-26
seq1209 120 4e-22
seq1211 87.8 2e-12
>seq1207
Length=20116479
Score = 134 bits (148), Expect = 2e-26
Identities = 424/648 (65%), Gaps = 23/648 (4%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||||| ||||| ||||| ||| | ||||| |||||||| || ||| ||||| ||| |
Sbjct 7938716 CCCCAGTATATGTTTATGCGCGTCTCTATCGGCATCCATGGTGAGGATCTTGATGCTGCT 7938775
Query 111672 TTGGAGACATACGACAAGATGTCCC----GTGGTATGTTCATCCACGCAACACCAACCCT 111727
| ||||| ||| | |||||| ||||| |||||| || |||| || ||
Sbjct 7938776 ATTGAGACGTACAATCTCATGTCCGAAAAGTGGTTGGTTCAT----GCTTCACCCACTCT 7938831
Query 111728 CTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGA 111787
|| || ||||| || || | || || |||||||| || || | || | | || ||
Sbjct 7938832 TTTTAATGCTGGGACGCCTAACCCTCAGATGTCCAGCTGCTTTTTGCTTACGATGAAAGA 7938891
Query 111788 GGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGC 111847
|| ||| | ||||| || | || |||| ||||||| | |||||||| | ||
Sbjct 7938892 TGACAGTATCGAGGGCATATATGATACGCTCAAACAATGTGCACTTATCTCAAAAAGTGC 7938951
Query 111848 TGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTAC 111907
|||||| || || | | | ||| | || | || || || || ||
Sbjct 7938952 TGGTGGAATTGGTCTCAATGTTCATTGTATCCGGAGTAAGGGCACTTTCATCGCTGGGAC 7939011
Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967
||||| | || | ||| || | || |||||||| || || ||| || || || ||
Sbjct 7939012 CAATGGCGAGTCCAACGGTCTTGTGCCGATGCTTCGGGTCTTCAACAGTACTGCTCGGTA 7939071
Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021
||| | || | || ||| | | || | | || | ||||| || || ||
Sbjct 7939072 TGTTGATCAGGGGGGCAATAAGCGACCC---GGTGCCTTTGCCATTTATCTCGAACCGTG 7939128
Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081
||| ||||| | || |||| | || || || ||| |||| ||||| || ||
Sbjct 7939129 GCATCCGGATGTGCTGCAGTTTGTGGAATTACGGAAGAACACTGGTGCCGAGGAAGCTCG 7939188
Query 112082 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140
||| || ||||| ||| || || |||||||| ||||| ||||||||| | ||||| |
Sbjct 7939189 -TGCGCGAGATCTTTTCCTTGCACTTTGGATTCCGGATCTATTCATGAAGCGTGTTGAAG 7939247
Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAG-AC-AAGGCACCCGGTCTCTCCGATGCCGT 112198
||||| ||| | || | | | || || || || |||||||| | || |
Sbjct 7939248 CAGGTGGCCCATGGAC-CTTTATGGACCCCCACGAATGC-CCCGGTCTTGCTGACTCTTG 7939305
Query 112199 GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG 112246
||| ||||| |||||| | |||||||||||||||||| |||| ||||
Sbjct 7939306 GGGGGAGGAATTTGAAACGCTCTACACAAAGTACGAGTTAGAAGGTCG 7939353
>seq1209
Length=14622995
Score = 120 bits (132), Expect = 4e-22
Identities = 176/244 (72%), Gaps = 10/244 (4%)
Strand=Plus/Plus
Query 102093 TTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 102152
||| | ||| | || || | |||||| || |||||||| ||||||||| | | ||||
Sbjct 7446362 TTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGG 7446421
Query 102153 TTTG---ATAC-AAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208
||| ||| |||| | | | | |||||||| || | ||||| || ||||||
Sbjct 7446422 ATTGCAAATAGGAAAGCCCCATAC----GCTGAGCGGCTAGTGGCATTCGCTGCTGTTGA 7446477
Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCA 102267
|| | ||||| |||||||| || ||| |||| | ||||||||||||||| |||||||
Sbjct 7446478 AGGCGTTTTCTTTTCTGGTTCATT-TGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCA 7446536
Query 102268 TGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGT 102327
||||||| ||| |||| ||||||| | ||| || || || || |||||| || |
Sbjct 7446537 TGCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATT 7446596
Query 102328 TTGC 102331
||||
Sbjct 7446597 TTGC 7446600
>seq1211
Length=11859842
Score = 87.8 bits (96), Expect = 2e-12
Identities = 130/181 (72%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 176891 GCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCA 176950
|| ||||||||||| || || || |||||||| ||||| ||| | || || |||
Sbjct 3461366 GCTTCACGAACATTGAGCAGTTTACCTCGCAGAGGGAAAACACCATAGCGGTCACGTCCA 3461425
Query 176951 ACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGT 177010
||||| ||||| || || || || | ||| || ||||| ||||| || | ||||||
Sbjct 3461426 ACCACTCCAAGACCAGCCACGGCCAGAGATTTGGCTGAATCCCCCTCGGTGAGGATGAGG 3461485
Query 177011 GTACACT--TGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATAC 177068
|| || | ||| | ||| | ||| ||||| | ||| ||||| ||||| || ||||| |
Sbjct 3461486 GTGCAGTGCTGCGA-ATTCT-TCGTCCCCGCGTCGTTAGCATCGTCCAACTTTGGAATCC 3461543
Query 177069 C 177069
|
Sbjct 3461544 C 3461544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620732956956240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |