Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1207 145 9e-30 seq1211 96.9 4e-15 >seq1207 Length=20116479 Score = 145 bits (160), Expect = 9e-30 Identities = 413/629 (66%), Gaps = 7/629 (1%) Strand=Plus/Minus Query 106687 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC 106746 |||||||||||||||||| | |||||| ||||| ||| | ||| | ||||| || || Sbjct 7939342 CTCGTACTTTGTGTAGAGCGTTTCAAATTCCTCCCCCCAAGAGTCAGCAAGACCGGG-GC 7939284 Query 106747 CTT-GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805 || || || | || | |||| | ||||| | ||||| ||||||||||| || | Sbjct 7939283 ATTCGTGGGGGTCCATAAAGGTCCATGGGCCACCTGCTTCAACACGCTTCATGAATAGAT 7939224 Query 106806 CTGGAATCCACAGGG-ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTG 106864 | |||||||| || | | | ||| ||||||| ||||| || ||| |||| ||| Sbjct 7939223 CCGGAATCCAAAGTGCAAGGAAA-AGATCTCGCGCACGAGCTTCCTCGGCACCAGTGTTC 7939165 Query 106865 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 106924 ||||| || | |||| || | ||||| ||||| || || ||||| | || | Sbjct 7939164 TTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAAATGGCAAAG 7939105 Query 106925 GATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 106981 | || ||| | || | |||| ||||| || || || ||| || || ||| Sbjct 7939104 GCACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTGAAGACCCGA 7939045 Query 106982 AGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCT 107041 ||||| || | || ||| | || | ||||| ||||| || || || Sbjct 7939044 AGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCCCAGCGATGAAAGTGCCCTTACTC 7938985 Query 107042 CTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 107101 | | | ||| | | | ||||| || ||||| | |||||||| | ||||| | Sbjct 7938984 CGGATACAATGAACATTGAGACCAATTCCACCAGCACTTTTTGAGATAAGTGCACATTGT 7938925 Query 107102 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 107161 | || || |||| || || | ||| ||| || || | | | | ||||| ||| Sbjct 7938924 TTGAGCGTATCATATATGCCCTCGATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTG 7938865 Query 107162 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 107221 |||||||| || | || || |||||||| || || || |||| || |||| ||| Sbjct 7938864 GACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCATGAACCAACCAC 7938805 Query 107222 CCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 107281 || |||||| | ||| ||||| | ||| ||||| || || || ||||||||| Sbjct 7938804 TTTTCGGACATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCACCATGGATGCCG 7938745 Query 107282 ATGGCCACACGCATAAACATGTATTGGGG 107310 || | || ||||||||||| || ||||| Sbjct 7938744 ATAGAGACGCGCATAAACATATACTGGGG 7938716 >seq1211 Length=11859842 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 169362 TTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACC 169421 || || || ||||| || || |||||| | ||||||||||| || ||||| || || Sbjct 3461387 TTACCTCGCAGAGGGAAAACACCATAGCGGTCACGTCCAACCACTCCAAGACCAGCCACG 3461446 Query 169422 GCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCC 169481 || || | ||| |||||||| ||||| |||| |||||||| || | || | | | Sbjct 3461447 GCCAGAGATTTGGCTGAATCCCCCTCGGTGAGGATGAGGGTGCAGTGCTGCGAATTCTTC 3461506 Query 169482 GTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACC 169519 || ||||| | ||| || ||||||||||| ||||| || Sbjct 3461507 GTCCCCGCGTCGTTAGCATCGTCCAACTTTGGAATCCC 3461544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589971824917080