Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 145 9e-30
seq1211 96.9 4e-15
>seq1207
Length=20116479
Score = 145 bits (160), Expect = 9e-30
Identities = 413/629 (66%), Gaps = 7/629 (1%)
Strand=Plus/Minus
Query 106687 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC 106746
|||||||||||||||||| | |||||| ||||| ||| | ||| | ||||| || ||
Sbjct 7939342 CTCGTACTTTGTGTAGAGCGTTTCAAATTCCTCCCCCCAAGAGTCAGCAAGACCGGG-GC 7939284
Query 106747 CTT-GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGT 106805
|| || || | || | |||| | ||||| | ||||| ||||||||||| || |
Sbjct 7939283 ATTCGTGGGGGTCCATAAAGGTCCATGGGCCACCTGCTTCAACACGCTTCATGAATAGAT 7939224
Query 106806 CTGGAATCCACAGGG-ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTG 106864
| |||||||| || | | | ||| ||||||| ||||| || ||| |||| |||
Sbjct 7939223 CCGGAATCCAAAGTGCAAGGAAA-AGATCTCGCGCACGAGCTTCCTCGGCACCAGTGTTC 7939165
Query 106865 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 106924
||||| || | |||| || | ||||| ||||| || || ||||| | || |
Sbjct 7939164 TTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAAATGGCAAAG 7939105
Query 106925 GATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 106981
| || ||| | || | |||| ||||| || || || ||| || || |||
Sbjct 7939104 GCACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTGAAGACCCGA 7939045
Query 106982 AGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCT 107041
||||| || | || ||| | || | ||||| ||||| || || ||
Sbjct 7939044 AGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCCCAGCGATGAAAGTGCCCTTACTC 7938985
Query 107042 CTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 107101
| | | ||| | | | ||||| || ||||| | |||||||| | ||||| |
Sbjct 7938984 CGGATACAATGAACATTGAGACCAATTCCACCAGCACTTTTTGAGATAAGTGCACATTGT 7938925
Query 107102 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 107161
| || || |||| || || | ||| ||| || || | | | | ||||| |||
Sbjct 7938924 TTGAGCGTATCATATATGCCCTCGATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTG 7938865
Query 107162 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 107221
|||||||| || | || || |||||||| || || || |||| || |||| |||
Sbjct 7938864 GACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCATGAACCAACCAC 7938805
Query 107222 CCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 107281
|| |||||| | ||| ||||| | ||| ||||| || || || |||||||||
Sbjct 7938804 TTTTCGGACATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCACCATGGATGCCG 7938745
Query 107282 ATGGCCACACGCATAAACATGTATTGGGG 107310
|| | || ||||||||||| || |||||
Sbjct 7938744 ATAGAGACGCGCATAAACATATACTGGGG 7938716
>seq1211
Length=11859842
Score = 96.9 bits (106), Expect = 4e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 169362 TTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACC 169421
|| || || ||||| || || |||||| | ||||||||||| || ||||| || ||
Sbjct 3461387 TTACCTCGCAGAGGGAAAACACCATAGCGGTCACGTCCAACCACTCCAAGACCAGCCACG 3461446
Query 169422 GCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCC 169481
|| || | ||| |||||||| ||||| |||| |||||||| || | || | | |
Sbjct 3461447 GCCAGAGATTTGGCTGAATCCCCCTCGGTGAGGATGAGGGTGCAGTGCTGCGAATTCTTC 3461506
Query 169482 GTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAATACC 169519
|| ||||| | ||| || ||||||||||| ||||| ||
Sbjct 3461507 GTCCCCGCGTCGTTAGCATCGTCCAACTTTGGAATCCC 3461544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589971824917080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |