Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 168 1e-36
seq1213 120 7e-22
>seq1207
Length=20116479
Score = 168 bits (186), Expect = 1e-36
Identities = 172/223 (77%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
||||| | |||||||||||| || ||||| |||||||||||||| |||| || |||| |
Sbjct 17430748 AGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGC 17430807
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
||||| || | |||||||| ||||||||||| ||||| || ||||| || || || |||
Sbjct 17430808 CCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCT 17430867
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGG 195099
|| || |||||||| || |||||||| |||| || |||| || || |||||
Sbjct 17430868 TTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATC---ACTTGGCTCAACCTCAAGT 17430924
Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| | || ||||| || | |||||||||||| | |||||||
Sbjct 17430925 GTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCATTT 17430967
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||||||||| || ||||| || ||||||||||| || | | | | |||||| ||
Sbjct 13120236 ACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTCC 13120295
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || || || ||||| || || || ||||| ||||| || || |||||||||
Sbjct 13120296 AACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGA 13120355
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || |||||||| | || ||| || || ||||| || | || ||
Sbjct 13120356 ATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTATAGTTTTG 13120415
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | |||||| ||||| | |||||
Sbjct 13120416 CCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444
>seq1213
Length=7437389
Score = 120 bits (132), Expect = 7e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||| || ||||| || ||||| ||||| |||| ||| || | || |||||
Sbjct 1838116 ACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 1838175
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || ||||| || || || || || || || ||||||||||||||||||||
Sbjct 1838176 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGT 1838235
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| || || | ||| | || || || | |||| ||||||
Sbjct 1838236 ATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTT 1838295
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 1838296 CCAGTGAGTGTCTTCACGAATATCTGCAT 1838324
Score = 118 bits (130), Expect = 2e-21
Identities = 154/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||||||||| ||||| || ||||| ||||| |||| ||| || | || |||||
Sbjct 1837888 ACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 1837947
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || ||||| || || || || || || || |||||||| || ||||| ||
Sbjct 1837948 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGG 1838007
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||| | ||| ||| ||||| ||||| || | |||
Sbjct 1838008 ATCTTCGCCTTCACATTCTCAATCGAGTC---ACTCGGCTCCACCTCAAGTGTGATGGTC 1838064
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || | || || || || | ||||||
Sbjct 1838065 TTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096
Score = 113 bits (124), Expect = 1e-19
Identities = 153/212 (72%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||||||| || ||||| || ||||||||||| |||| ||| || | || |||||
Sbjct 1844326 ACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 1844267
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| || ||||| || || || || || || || |||||||| || ||||| ||
Sbjct 1844266 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGG 1844207
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||| | ||| ||| ||||| ||||| || | |||
Sbjct 1844206 ATCTTCGCCTTCACATTCTCAATCGAGTC---ACTCGGCTCCACCTCAAGTGTGATGGTC 1844150
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || | || || || || | |||||
Sbjct 1844149 TTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109464300061439
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |