Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1207 168 1e-36 seq1213 120 7e-22 >seq1207 Length=20116479 Score = 168 bits (186), Expect = 1e-36 Identities = 172/223 (77%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | |||||||||||| || ||||| |||||||||||||| |||| || |||| | Sbjct 17430748 AGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGC 17430807 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || | |||||||| ||||||||||| ||||| || ||||| || || || ||| Sbjct 17430808 CCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCT 17430867 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGG 195099 || || |||||||| || |||||||| |||| || |||| || || ||||| Sbjct 17430868 TTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATC---ACTTGGCTCAACCTCAAGT 17430924 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || | || ||||| || | |||||||||||| | ||||||| Sbjct 17430925 GTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCATTT 17430967 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || ||||| || ||||||||||| || | | | | |||||| || Sbjct 13120236 ACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTCC 13120295 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || || ||||| || || || ||||| ||||| || || ||||||||| Sbjct 13120296 AACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGA 13120355 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||| | || ||| || || ||||| || | || || Sbjct 13120356 ATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTATAGTTTTG 13120415 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||| ||||| | ||||| Sbjct 13120416 CCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444 >seq1213 Length=7437389 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || ||||| ||||| |||| ||| || | || ||||| Sbjct 1838116 ACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 1838175 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || ||||| || || || || || || || |||||||||||||||||||| Sbjct 1838176 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGT 1838235 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||| || || | ||| | || || || | |||| |||||| Sbjct 1838236 ATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTT 1838295 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 1838296 CCAGTGAGTGTCTTCACGAATATCTGCAT 1838324 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| ||||| || ||||| ||||| |||| ||| || | || ||||| Sbjct 1837888 ACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 1837947 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || ||||| || || || || || || || |||||||| || ||||| || Sbjct 1837948 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGG 1838007 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||| | ||| ||| ||||| ||||| || | ||| Sbjct 1838008 ATCTTCGCCTTCACATTCTCAATCGAGTC---ACTCGGCTCCACCTCAAGTGTGATGGTC 1838064 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || || || | |||||| Sbjct 1838065 TTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || ||||||||||| |||| ||| || | || ||||| Sbjct 1844326 ACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 1844267 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || ||||| || || || || || || || |||||||| || ||||| || Sbjct 1844266 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGG 1844207 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||| | ||| ||| ||||| ||||| || | ||| Sbjct 1844206 ATCTTCGCCTTCACATTCTCAATCGAGTC---ACTCGGCTCCACCTCAAGTGTGATGGTC 1844150 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || || || | ||||| Sbjct 1844149 TTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109464300061439