Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1213 120 2e-22 seq1207 86.0 4e-12 >seq1213 Length=7437389 Score = 120 bits (132), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| || ||||||||||| ||||| |||||| | || | || ||| Sbjct 1844554 ACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 1844495 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| || ||||| || || ||||| || | || | ||||||||||| Sbjct 1844494 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGG 1844435 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| ||| || || || ||||| |||| | ||| || || | || ||||| | Sbjct 1844434 ATCTTCGCTTTCAC--ATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCT 1844377 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || |||||||||||||| |||||| Sbjct 1844376 TGCCAGTAAGTGTCTTCACAAAGATTTGCATA 1844345 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| || ||||||||||| ||||| |||||| | || | || ||| Sbjct 1838116 ACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 1838175 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| || ||||| || || ||||| || | || | || || ||||| Sbjct 1838176 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGT 1838235 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | ||||||| |||| | |||||| || | || || || ||| Sbjct 1838236 ATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTT 1838295 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| |||||||| || |||||||| Sbjct 1838296 CCAGTGAGTGTCTTCACGAATATCTGCAT 1838324 Score = 114 bits (126), Expect = 8e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| || |||||||| || ||||| |||||| | || | || ||| Sbjct 1844326 ACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 1844267 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| || ||||| || || ||||| || | || | ||||||||||| Sbjct 1844266 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGG 1844207 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| || || || || ||||| |||| | ||| || || | || ||||| | Sbjct 1844206 ATCTTCGCCTTCAC--ATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCT 1844149 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||||||||||||||| Sbjct 1844148 TGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| || || ||||||||||| ||||| |||||| | || | || ||| Sbjct 1837888 ACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCC 1837947 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| || ||||| || || ||||| || | || | ||||||||||| Sbjct 1837948 AACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGG 1838007 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| || || || || ||||| |||| | ||| || || | || ||||| | Sbjct 1838008 ATCTTCGCCTTCAC--ATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCT 1838065 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || || || |||||||||||||| |||||| Sbjct 1838066 TGCCAGTAAGTGTCTTCACAAAGATTTGCATA 1838097 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| |||||| | || | || |||| ||| ||||| || ||| Sbjct 1844764 TCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAAT 1844705 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| || | || | ||||||||||| |||||| || || || Sbjct 1844704 ATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC--AT 1844647 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || ||||| |||| | ||| || || | || ||||| || || || || ||||||| Sbjct 1844646 TCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCA 1844587 Query 34969 CAAAGATCTGCATA 34982 ||||||| |||||| Sbjct 1844586 CAAAGATTTGCATA 1844573 >seq1207 Length=20116479 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| || ||||| || | | || |||| |||| ||| || || ||||| Sbjct 13120254 TCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTCCAACTGCTTGCCAGCAAAA 13120313 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| |||||| || || || Sbjct 13120314 ATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTTAGCCTTTAC--AT 13120371 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || || ||| | ||| || || | ||||| ||||| || || ||||| |||| Sbjct 13120372 TCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTATAGTTTTGCCAGTAAGAGTTTTCA 13120431 Query 34969 CAAAGATCTGCAT 34981 | || |||||||| Sbjct 13120432 CGAAAATCTGCAT 13120444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324628784973576