Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1209 255 7e-63 >seq1209 Length=14622995 Score = 255 bits (282), Expect = 7e-63 Identities = 521/766 (68%), Gaps = 10/766 (1%) Strand=Plus/Minus Query 18787 AGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATT 18846 ||||| | ||| || ||||| | || ||| | ||| | ||||||||| || || Sbjct 7446777 AGTAGCCGATCGGCAACAAACCTTATGTATTGGCACATTAGGCGACAATTCATGCCAATA 7446718 Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906 | || ||||||| ||| ||||| |||||||| ||| || | || ||||| ||| Sbjct 7446717 AGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCTAACCGCCTCCCTCATA 7446658 Query 18907 ATAG-ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965 || ||| |||||| || | |||| || | || ||||||||| || | ||||| Sbjct 7446657 ATGTCATA-AACTCTTGCTGCCGTAGGTTTGTTGACAATATGTTTAAAAATAAGGCATGC 7446599 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 |||||| || || || || || | || ||||| || || || || | || || Sbjct 7446598 AAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCTGG 7446539 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||| || || | || || | ||| || |||||||||||||| ||||||||||| | || Sbjct 7446538 CATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAAAACGCC 7446479 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || || || || || ||||| | || | || || | |||| |||||| Sbjct 7446478 TTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGGGGCTTTCCTATTTGCAATCCA 7446419 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 | || |||||||| || ||||| |||||||||| |||| | | ||||| | Sbjct 7446418 CCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGCGTTAAACAA 7446359 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | | || || ||| ||| |||| || | ||| |||| | | ||||||||| || Sbjct 7446358 AAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTACATTTCGGA 7446299 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 |||||| ||||| | || | || | ||||||||||| | || || | || || || Sbjct 7446298 ATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGAGCCTCGGGAATTTGGAC 7446239 Query 19326 TTCACTACAAAATCTTTCGA--CCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||| ||||||| ||| | | ||||||||||| || |||||||| ||||||||| Sbjct 7446238 TTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACGATGCCATCACTGGCTGCAAAA 7446181 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATC-TGAGGTTAATGTATT-CCAATCAT 19441 || || || |||| || ||||| ||| | | | |||| | || ||||||| Sbjct 7446180 AAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA--TTAAGGCCTTCCCAATCAG 7446123 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 | | || || | ||||| ||||| |||||||||||||| || || | ||||| || | Sbjct 7446122 TGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGAGGCAACAGCTTTCTTGT 7446063 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 | | | ||| || ||| ||||||| || || | | ||||||||| Sbjct 7446062 AAAACTCCCAGATGTCATGATATTGGATGGGCATCACAACAAATCT 7446017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562100248919880