Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 255 7e-63
>seq1209
Length=14622995
Score = 255 bits (282), Expect = 7e-63
Identities = 521/766 (68%), Gaps = 10/766 (1%)
Strand=Plus/Minus
Query 18787 AGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATT 18846
||||| | ||| || ||||| | || ||| | ||| | ||||||||| || ||
Sbjct 7446777 AGTAGCCGATCGGCAACAAACCTTATGTATTGGCACATTAGGCGACAATTCATGCCAATA 7446718
Query 18847 AATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATA 18906
| || ||||||| ||| ||||| |||||||| ||| || | || ||||| |||
Sbjct 7446717 AGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCTAACCGCCTCCCTCATA 7446658
Query 18907 ATAG-ATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965
|| ||| |||||| || | |||| || | || ||||||||| || | |||||
Sbjct 7446657 ATGTCATA-AACTCTTGCTGCCGTAGGTTTGTTGACAATATGTTTAAAAATAAGGCATGC 7446599
Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025
|||||| || || || || || | || ||||| || || || || | || ||
Sbjct 7446598 AAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCTGG 7446539
Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085
||| || || | || || | ||| || |||||||||||||| ||||||||||| | ||
Sbjct 7446538 CATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAAAACGCC 7446479
Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145
||| || || || || || ||||| | || | || || | |||| ||||||
Sbjct 7446478 TTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGGGGCTTTCCTATTTGCAATCCA 7446419
Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205
| || |||||||| || ||||| |||||||||| |||| | | ||||| |
Sbjct 7446418 CCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGCGTTAAACAA 7446359
Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265
| | || || ||| ||| |||| || | ||| |||| | | ||||||||| ||
Sbjct 7446358 AAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTACATTTCGGA 7446299
Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325
|||||| ||||| | || | || | ||||||||||| | || || | || || ||
Sbjct 7446298 ATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGAGCCTCGGGAATTTGGAC 7446239
Query 19326 TTCACTACAAAATCTTTCGA--CCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383
||| ||||||| ||| | | ||||||||||| || |||||||| |||||||||
Sbjct 7446238 TTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACGATGCCATCACTGGCTGCAAAA 7446181
Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATC-TGAGGTTAATGTATT-CCAATCAT 19441
|| || || |||| || ||||| ||| | | | |||| | || |||||||
Sbjct 7446180 AAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCA--TTAAGGCCTTCCCAATCAG 7446123
Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501
| | || || | ||||| ||||| |||||||||||||| || || | ||||| || |
Sbjct 7446122 TGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGAGGCAACAGCTTTCTTGT 7446063
Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547
| | | ||| || ||| ||||||| || || | | |||||||||
Sbjct 7446062 AAAACTCCCAGATGTCATGATATTGGATGGGCATCACAACAAATCT 7446017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562100248919880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |