Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1211 150 1e-30
seq1210 145 6e-29
seq1208 113 4e-19
seq1207 111 1e-18
>seq1211
Length=11859842
Score = 150 bits (166), Expect = 1e-30
Identities = 366/544 (67%), Gaps = 14/544 (3%)
Strand=Plus/Minus
Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050
||| || ||||| || ||||| || || | | || || ||||||| || ||||| ||
Sbjct 8946635 AGCCATCGGTATTGACTTAGGGACAACCTTTTCGTGCGTCGGTGTTTTTCAGAATGGCAA 8946576
Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110
|| |||||||||||||||||||| ||| | | | || || |||||| | |||||
Sbjct 8946575 GGTGGAAATTATTGCCAATGATCAGGGTCTCCGCATAACACCCGGTTATGTAGCCTTCAC 8946516
Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170
|| | || | | | || ||||| || ||||| | ||||| ||| || || || ||
Sbjct 8946515 AGATAAAGAGCGTCTCGTCGGTGAGGCTGCAAAGAACCAAGCTACTTTAAACCCAACTAA 8946456
Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT-TCGACTGTTCAGG 550229
||| ||||||| || || ||||| || ||| | | |||||| | || || || |
Sbjct 8946455 TACGGTTTTTGACGCAAAGCGTTTGATCGGACGCCAAATCAATGATGTAGA-AGTCCAAG 8946397
Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289
|| | || ||||||||| ||| || | || ||| | || ||||| | |||| |
Sbjct 8946396 ACGACAAGAGGCATTGGCCATTCAAAGTGGTAAATTCTGAAGGGAAACCGAAGATTG-GG 8946338
Query 550290 CTA---CTCATGAAGGATCTGTTAAACAATTTTCA--CCAGAACAAATTTCATCTATGGT 550344
|| | | || || | ||| || |||| ||||| | || || || |||||
Sbjct 8946337 GTAGAGTTTCTTAATGA---GACAAAGAA-GTTCATTGCAGAAGAGATCTCGTCCATGGT 8946282
Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAG 550403
| |||| |||||| | ||||| || ||| |||| || | |||| || |||||||
Sbjct 8946281 GCTGCTGAAGATGAAAGAGACAGCAGAAGCGTTT-TTGGGCACAAAAGTGACAGATGCAG 8946223
Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463
||| || ||||| |||| || ||||| ||||| || || || | |||||| ||
Sbjct 8946222 TAACTACAGTACCGGCATGCTTCAATGATAGGCAACGACAGGCGACGATAGATGCAGGGA 8946163
Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523
|||| || | || || || ||||| | || || || || || ||||| | ||||
Sbjct 8946162 AAGTTGCGGGTTTAAACGTGCTGCGTATCGTTAACGAGCCCACGGCAGCTGCTATCGCAT 8946103
Query 550524 ATGG 550527
||||
Sbjct 8946102 ATGG 8946099
>seq1210
Length=13762452
Score = 145 bits (160), Expect = 6e-29
Identities = 348/523 (67%), Gaps = 19/523 (4%)
Strand=Plus/Minus
Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085
|||||||||||| | || || |||||||| || || ||||| ||||| || | |
Sbjct 7908293 GTGTTGGTGTTTTCAAGAACGGACGTGTTGAAATCATCGCAAATGACCAAGGCAATCGTA 7908234
Query 550086 CTACTCCATCTTATGTTTCTTTCACGG---AAACTGAACATTTAGTTGGTGATGCAGCAA 550142
|| |||||||||||| | ||| | | | ||||| | |||||||||| ||||
Sbjct 7908233 TAACACCATCTTATGTTGCATTCTCTGGTGATGGTGAACGACTGATTGGTGATGCGGCAA 7908174
Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202
|| ||||| || ||||||| |||||| | || ||||| ||||| | |||||
Sbjct 7908173 AAAATCAATTGACCTCAAATCCTAAGAATACTTTGTTCGATGCCAAACGACTCATTGGTC 7908114
Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262
| || | | ||| ||| |||| ||||| || | || || ||| || || ||
Sbjct 7908113 GTGATTATGACGATAAAGATGTGCAGGGTGATATTAAACGTTATCCGTTC-AAGGTGATA 7908055
Query 550263 ATGTTTCTGGAA-----AACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAA-- 550315
| | ||| |||| ||||| ||| | || | ||| || | |
Sbjct 7908054 AA----CAAGAACAATAAACCGTATATGAAAGTT---CAAGTAGGGAGTGAGGAGAAGGG 7908002
Query 550316 -TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGC 550374
|| | || || | |||| |||||||| | | |||||||| ||| ||| ||
Sbjct 7908001 CTTCGCCCCCGAGGAGGTTTCGGCTATGGTTCTTAGTAAAATGAAGGAAATTGCCGAGGC 7907942
Query 550375 TTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTC 550434
| | |||| |||||||| | || || | ||||| || || || || |||||| |
Sbjct 7907941 CTATCTTGGCACTGAAGTTACCCACGCTGTCGTCACTGTGCCCGCCTACTTCAATGACGC 7907882
Query 550435 ACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTAT 550494
||||||||||| || ||||||||||| |||||||| || | ||| | || |||||
Sbjct 7907881 TCAACGTCAAGCGACCAAAGATGCTGGTGCCATTGCTGGCCTGACTGTGTTGCGAATTAT 7907822
Query 550495 CAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537
||||||||| ||||| ||||| |||| ||||| | ||||||
Sbjct 7907821 CAATGAACCAACTGCCGCTGCGATTGCCTATGGTTTGGATAAA 7907779
Score = 131 bits (144), Expect = 1e-24
Identities = 366/553 (66%), Gaps = 14/553 (3%)
Strand=Plus/Minus
Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050
|||| | ||||| || || || || || | ||| |||||||| | ||| | || ||
Sbjct 13747424 AGCTGTTGGTATCGACTTGGGGACGACTTTCTCTTGCGTTGGTGTATTTCAACACGGCAA 13747365
Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110
|| || || || ||||| |||||||| || | || ||||| |||||| |||| ||
Sbjct 13747364 GGTGGAGATCATCGCCAACGATCAAGGCAATCGTACCACTCCGAGTTATGTCGCTTTTAC 13747305
Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170
||| || || | | | |||||||||| || || |||| | || ||||| | |||
Sbjct 13747304 GGATACGGAGCGTCTTATTGGTGATGCTGCCAAGAATCAGGTGGCTATGAATCCCAGCAA 13747245
Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230
|| | |||||||| || || || || ||| | ||||| | ||| | | || || |
Sbjct 13747244 CACGGTATTTGATGCCAAGCGATTGATAGGACGTCGTTTTGACGATAAGGCGGTGCAAGA 13747185
Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGA 550287
|||||||||||||||||||| ||| || | | || ||| ||||| | || ||
Sbjct 13747184 TGATATGAAGCATTGGCCTTT-CAAGGTGATCA--ACTCAGGAGGCAAACCAAAGATCGA 13747128
Query 550288 AGCT-ACT--CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344
|| | | | | || | | |||||||| |||| | || ||||| |||||
Sbjct 13747127 AGTTGAGTACCGTGGTGAGAC---AAAACAATTCAGCGCAGAGGAGATCTCATCCATGGT 13747071
Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAG 550403
|| || ||||| |||| | ||| | |||| |||||| || | ||||| |
Sbjct 13747070 ACTATCAAAGATGAAGGAAACTG-CAGAAGCGTACTTGGGCAAGAAGGTGTCAGATGCGG 13747012
Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463
| | || || || || || || ||||| ||||| || || || || || || ||
Sbjct 13747011 TTGTCACAGTGCCGGCTTACTTCAATGATAGTCAACGCCAGGCAACGAAGGACGCGGGTG 13746952
Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523
|| | || || ||||| | || |||||||| ||||| || || ||||| |||| |
Sbjct 13746951 CGATATCGGGTCTGAATGTATTACGCATTATCAACGAACCGACAGCGGCTGCCATTGCCT 13746892
Query 550524 ATGGACTTGATAA 550536
| || | |||||
Sbjct 13746891 ACGGTTTGGATAA 13746879
>seq1208
Length=17597482
Score = 113 bits (124), Expect = 4e-19
Identities = 106/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || ||||| || || ||||| ||||| || || || || ||||| |||||||||
Sbjct 13302826 GCGGTTATCACTGTTCCTGCCTATTTCAATGATTCCCAGCGGCAGGCTACCAAAGATGCT 13302885
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
|| | || || || || |||||||||||| | |||||||||||||||||||| || ||
Sbjct 13302886 GGTCAGATAGCCGGCCTGAATGTTCTTCGTGTCATCAATGAACCTACTGCTGCGGCTCTC 13302945
Query 550520 GCATATGGACTTGAT 550534
|| || || || |||
Sbjct 13302946 GCTTACGGTCTGGAT 13302960
Score = 109 bits (120), Expect = 4e-18
Identities = 370/567 (65%), Gaps = 26/567 (5%)
Strand=Plus/Minus
Query 549974 ATAATGTCAAACAAAGT--AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTG 550031
|||||||||| ||||| ||| |||| || ||||| ||||| || | || ||||
Sbjct 15642544 ATAATGTCAA--AAAGTCCGGCTGTAGGCATTGATTTGGGAACAACGTTCTCGTGCGTTG 15642487
Query 550032 GTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTC 550091
|||| | ||| | || || || || || || || ||||| ||||| ||| | || || |
Sbjct 15642486 GTGTGTTTCAACACGGCAAGGTGGAGATAATCGCGAATGACCAAGGCAACCGCACGACGC 15642427
Query 550092 CATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA-- 550149
| |||||| | |||||||| || || | | | |||| |||||||| || | ||
Sbjct 15642426 CGAGTTATGTGGCGTTCACGGATACAGAGCGTCTGATTGGGGATGCAGCGAAGAACCAGG 15642367
Query 550150 -AGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTT 550208
|||| || || || || ||||| | || ||||| || || | || ||| | |||
Sbjct 15642366 TGGCCA-TG--AACCCGACGAATACAGTGTTCGATGCGAAGCGCCTGATCGGACGTCGTT 15642310
Query 550209 TTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTT 550268
| | || | | || |||| || |||||||| ||||| ||| | | | |||| |
Sbjct 15642309 TCGACGACAGGGCAGTGCAGGACGACATGAAGCACTGGCCGTTCAAGGTGATAAATGCTG 15642250
Query 550269 CTGGAAAACCTTATATTGAAGCTACTCATGAAGGATC--TGTTAAACAA---TTTTCA-- 550321
|| || || | || || | || || | | || | || | |||||
Sbjct 15642249 GAGGCAAGCCGAAGATCGAGG-------TGGAGTACCGTGGTGAGACGAAGTGTTTCAGT 15642197
Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381
| || | | ||||| ||||| | |||| ||||| | || || || | | ||
Sbjct 15642196 GCGGAGGAGGTATCATCGATGGTGCTGTTGAAGATGAAGGAGACGGCGGAGGCGTAT-TT 15642138
Query 550382 GGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440
|| ||||| || | |||||||| || || || || || || || || ||| |||||
Sbjct 15642137 GGGGAAGAAGGTGAGCGATGCAGTGATCACGGTGCCGGCGTACTTCAACGACAGTCAACG 15642078
Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500
||| || || || ||||| || || | ||| | ||||| || || || ||||||||
Sbjct 15642077 TCAGGCGACGAAGGATGCGGGTACAATATCGGGATTGAATGTGCTGCGCATAATCAATGA 15642018
Query 550501 ACCTACTGCTGCTGCACTTGCATATGG 550527
|| || || || || |||| |||||
Sbjct 15642017 GCCGACGGCGGCGGCGATTGCGTATGG 15641991
Score = 89.7 bits (98), Expect = 4e-12
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
|| || ||||| || || ||||||||||| || || | | | ||||||| |||||
Sbjct 320949 GTCACAGATGCTGTGATTACTGTACCAGCTTACTTCAGTAGCCGCCAACGTCGGGCTACA 321008
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
| || || ||| ||||| || || ||||| || ||| | ||||| || || |||||
Sbjct 321009 ATTGACGCAGGAAAAATTGCGGGTCTGAATGTGCTGCGTCTCATCAACGAGCCGACTGCA 321068
Query 550511 GCTGCACTTGCATATGGACTTGATAAACATAA-TGATCAAGAACTTAATGTACTCATCTT 550569
||||| ||||||| || | ||| || | || ||| | | | | ||||| ||| ||||
Sbjct 321069 GCTGCCATTGCATACGG-CGTGAAGAAGAGAAGTGAGCGACAGCACAATGTGCTCGTCTT 321127
Query 550570 TGATTGTGGAGGT 550582
||||| || |||
Sbjct 321128 CGATTGGGGTGGT 321140
Score = 89.7 bits (98), Expect = 4e-12
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
|| || ||||| || || ||||||||||| || || | | | ||||||| |||||
Sbjct 655360 GTCACAGATGCTGTGATTACTGTACCAGCTTACTTCAGTAGCCGCCAACGTCGGGCTACA 655301
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
| || || ||| ||||| || || ||||| || ||| | ||||| || || |||||
Sbjct 655300 ATTGACGCAGGAAAAATTGCGGGTCTGAATGTGCTGCGTCTCATCAACGAGCCGACTGCA 655241
Query 550511 GCTGCACTTGCATATGGACTTGATAAACATAA-TGATCAAGAACTTAATGTACTCATCTT 550569
||||| ||||||| || | ||| || | || ||| | | | | ||||| ||| ||||
Sbjct 655240 GCTGCCATTGCATACGG-CGTGAAGAAGAGAAGTGAGCGACAGCACAATGTGCTCGTCTT 655182
Query 550570 TGATTGTGGAGGT 550582
||||| || |||
Sbjct 655181 CGATTGGGGTGGT 655169
Score = 89.7 bits (98), Expect = 4e-12
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|||||||| || ||||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 13303878 GGTATTCCACCGGCTCCTCGTGGCATACCGCAGATTGAAGTTACCTTCGATATCGATGCA 13303937
Query 552567 AATGGAATT 552575
|| ||||||
Sbjct 13303938 AACGGAATT 13303946
>seq1207
Length=20116479
Score = 111 bits (122), Expect = 1e-18
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 563263 AGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAAT 563320
|| ||||| ||||| || ||| |||| ||||||||| || | ||| |||| ||
Sbjct 17430754 AGAACAAGGTGAAGTGTCGACTCCTTTTG--AATATTGTAGTCGGATAGGGTTCGCCCAT 17430811
Query 563321 CTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 563380
| || | ||| || || || || ||||| | ||||||||| || || || || |||||||
Sbjct 17430812 CCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTAT 17430871
Query 563381 CTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAG 563440
| |||||||| ||| || ||| || | |||| | | | || || || | ||
Sbjct 17430872 CCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAG 17430931
Query 563441 TTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||| |||||||||||||| |||||||| |||||
Sbjct 17430932 TTTTTCCAGTAAGAGTTTTTACGAAAATCTGCAT 17430965
Score = 109 bits (120), Expect = 4e-18
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||| || ||||| |||||||| || || ||||||||| |||| || | |
Sbjct 13120227 AGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGC 13120286
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
||| || | || || || ||||||||||| | |||||||| || ||||| || ||
Sbjct 13120287 CCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCC 13120346
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436
|| |||||||| || ||||| |||||| | ||||| | || |||||
Sbjct 13120347 TTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTT 13120406
Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| |||||| |||||||||||||| |||||||| |||||
Sbjct 13120407 ATAGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029231639551330
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