Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1211 150 1e-30 seq1210 145 6e-29 seq1208 113 4e-19 seq1207 111 1e-18 >seq1211 Length=11859842 Score = 150 bits (166), Expect = 1e-30 Identities = 366/544 (67%), Gaps = 14/544 (3%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||| || ||||| || ||||| || || | | || || ||||||| || ||||| || Sbjct 8946635 AGCCATCGGTATTGACTTAGGGACAACCTTTTCGTGCGTCGGTGTTTTTCAGAATGGCAA 8946576 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || |||||||||||||||||||| ||| | | | || || |||||| | ||||| Sbjct 8946575 GGTGGAAATTATTGCCAATGATCAGGGTCTCCGCATAACACCCGGTTATGTAGCCTTCAC 8946516 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || | || | | | || ||||| || ||||| | ||||| ||| || || || || Sbjct 8946515 AGATAAAGAGCGTCTCGTCGGTGAGGCTGCAAAGAACCAAGCTACTTTAAACCCAACTAA 8946456 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT-TCGACTGTTCAGG 550229 ||| ||||||| || || ||||| || ||| | | |||||| | || || || | Sbjct 8946455 TACGGTTTTTGACGCAAAGCGTTTGATCGGACGCCAAATCAATGATGTAGA-AGTCCAAG 8946397 Query 550230 CAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG 550289 || | || ||||||||| ||| || | || ||| | || ||||| | |||| | Sbjct 8946396 ACGACAAGAGGCATTGGCCATTCAAAGTGGTAAATTCTGAAGGGAAACCGAAGATTG-GG 8946338 Query 550290 CTA---CTCATGAAGGATCTGTTAAACAATTTTCA--CCAGAACAAATTTCATCTATGGT 550344 || | | || || | ||| || |||| ||||| | || || || ||||| Sbjct 8946337 GTAGAGTTTCTTAATGA---GACAAAGAA-GTTCATTGCAGAAGAGATCTCGTCCATGGT 8946282 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCA-AGAAGTTACGGATGCAG 550403 | |||| |||||| | ||||| || ||| |||| || | |||| || ||||||| Sbjct 8946281 GCTGCTGAAGATGAAAGAGACAGCAGAAGCGTTT-TTGGGCACAAAAGTGACAGATGCAG 8946223 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 ||| || ||||| |||| || ||||| ||||| || || || | |||||| || Sbjct 8946222 TAACTACAGTACCGGCATGCTTCAATGATAGGCAACGACAGGCGACGATAGATGCAGGGA 8946163 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 |||| || | || || || ||||| | || || || || || ||||| | |||| Sbjct 8946162 AAGTTGCGGGTTTAAACGTGCTGCGTATCGTTAACGAGCCCACGGCAGCTGCTATCGCAT 8946103 Query 550524 ATGG 550527 |||| Sbjct 8946102 ATGG 8946099 >seq1210 Length=13762452 Score = 145 bits (160), Expect = 6e-29 Identities = 348/523 (67%), Gaps = 19/523 (4%) Strand=Plus/Minus Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085 |||||||||||| | || || |||||||| || || ||||| ||||| || | | Sbjct 7908293 GTGTTGGTGTTTTCAAGAACGGACGTGTTGAAATCATCGCAAATGACCAAGGCAATCGTA 7908234 Query 550086 CTACTCCATCTTATGTTTCTTTCACGG---AAACTGAACATTTAGTTGGTGATGCAGCAA 550142 || |||||||||||| | ||| | | | ||||| | |||||||||| |||| Sbjct 7908233 TAACACCATCTTATGTTGCATTCTCTGGTGATGGTGAACGACTGATTGGTGATGCGGCAA 7908174 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 || ||||| || ||||||| |||||| | || ||||| ||||| | ||||| Sbjct 7908173 AAAATCAATTGACCTCAAATCCTAAGAATACTTTGTTCGATGCCAAACGACTCATTGGTC 7908114 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262 | || | | ||| ||| |||| ||||| || | || || ||| || || || Sbjct 7908113 GTGATTATGACGATAAAGATGTGCAGGGTGATATTAAACGTTATCCGTTC-AAGGTGATA 7908055 Query 550263 ATGTTTCTGGAA-----AACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAA-- 550315 | | ||| |||| ||||| ||| | || | ||| || | | Sbjct 7908054 AA----CAAGAACAATAAACCGTATATGAAAGTT---CAAGTAGGGAGTGAGGAGAAGGG 7908002 Query 550316 -TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGC 550374 || | || || | |||| |||||||| | | |||||||| ||| ||| || Sbjct 7908001 CTTCGCCCCCGAGGAGGTTTCGGCTATGGTTCTTAGTAAAATGAAGGAAATTGCCGAGGC 7907942 Query 550375 TTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTC 550434 | | |||| |||||||| | || || | ||||| || || || || |||||| | Sbjct 7907941 CTATCTTGGCACTGAAGTTACCCACGCTGTCGTCACTGTGCCCGCCTACTTCAATGACGC 7907882 Query 550435 ACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTAT 550494 ||||||||||| || ||||||||||| |||||||| || | ||| | || ||||| Sbjct 7907881 TCAACGTCAAGCGACCAAAGATGCTGGTGCCATTGCTGGCCTGACTGTGTTGCGAATTAT 7907822 Query 550495 CAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 ||||||||| ||||| ||||| |||| ||||| | |||||| Sbjct 7907821 CAATGAACCAACTGCCGCTGCGATTGCCTATGGTTTGGATAAA 7907779 Score = 131 bits (144), Expect = 1e-24 Identities = 366/553 (66%), Gaps = 14/553 (3%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| || || || || || | ||| |||||||| | ||| | || || Sbjct 13747424 AGCTGTTGGTATCGACTTGGGGACGACTTTCTCTTGCGTTGGTGTATTTCAACACGGCAA 13747365 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || || || || ||||| |||||||| || | || ||||| |||||| |||| || Sbjct 13747364 GGTGGAGATCATCGCCAACGATCAAGGCAATCGTACCACTCCGAGTTATGTCGCTTTTAC 13747305 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 ||| || || | | | |||||||||| || || |||| | || ||||| | ||| Sbjct 13747304 GGATACGGAGCGTCTTATTGGTGATGCTGCCAAGAATCAGGTGGCTATGAATCCCAGCAA 13747245 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || | |||||||| || || || || ||| | ||||| | ||| | | || || | Sbjct 13747244 CACGGTATTTGATGCCAAGCGATTGATAGGACGTCGTTTTGACGATAAGGCGGTGCAAGA 13747185 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGA 550287 |||||||||||||||||||| ||| || | | || ||| ||||| | || || Sbjct 13747184 TGATATGAAGCATTGGCCTTT-CAAGGTGATCA--ACTCAGGAGGCAAACCAAAGATCGA 13747128 Query 550288 AGCT-ACT--CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 || | | | | || | | |||||||| |||| | || ||||| ||||| Sbjct 13747127 AGTTGAGTACCGTGGTGAGAC---AAAACAATTCAGCGCAGAGGAGATCTCATCCATGGT 13747071 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAG 550403 || || ||||| |||| | ||| | |||| |||||| || | ||||| | Sbjct 13747070 ACTATCAAAGATGAAGGAAACTG-CAGAAGCGTACTTGGGCAAGAAGGTGTCAGATGCGG 13747012 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | | || || || || || || ||||| ||||| || || || || || || || Sbjct 13747011 TTGTCACAGTGCCGGCTTACTTCAATGATAGTCAACGCCAGGCAACGAAGGACGCGGGTG 13746952 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 || | || || ||||| | || |||||||| ||||| || || ||||| |||| | Sbjct 13746951 CGATATCGGGTCTGAATGTATTACGCATTATCAACGAACCGACAGCGGCTGCCATTGCCT 13746892 Query 550524 ATGGACTTGATAA 550536 | || | ||||| Sbjct 13746891 ACGGTTTGGATAA 13746879 >seq1208 Length=17597482 Score = 113 bits (124), Expect = 4e-19 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| || || ||||| ||||| || || || || ||||| ||||||||| Sbjct 13302826 GCGGTTATCACTGTTCCTGCCTATTTCAATGATTCCCAGCGGCAGGCTACCAAAGATGCT 13302885 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | || || || || |||||||||||| | |||||||||||||||||||| || || Sbjct 13302886 GGTCAGATAGCCGGCCTGAATGTTCTTCGTGTCATCAATGAACCTACTGCTGCGGCTCTC 13302945 Query 550520 GCATATGGACTTGAT 550534 || || || || ||| Sbjct 13302946 GCTTACGGTCTGGAT 13302960 Score = 109 bits (120), Expect = 4e-18 Identities = 370/567 (65%), Gaps = 26/567 (5%) Strand=Plus/Minus Query 549974 ATAATGTCAAACAAAGT--AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTG 550031 |||||||||| ||||| ||| |||| || ||||| ||||| || | || |||| Sbjct 15642544 ATAATGTCAA--AAAGTCCGGCTGTAGGCATTGATTTGGGAACAACGTTCTCGTGCGTTG 15642487 Query 550032 GTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTC 550091 |||| | ||| | || || || || || || || ||||| ||||| ||| | || || | Sbjct 15642486 GTGTGTTTCAACACGGCAAGGTGGAGATAATCGCGAATGACCAAGGCAACCGCACGACGC 15642427 Query 550092 CATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA-- 550149 | |||||| | |||||||| || || | | | |||| |||||||| || | || Sbjct 15642426 CGAGTTATGTGGCGTTCACGGATACAGAGCGTCTGATTGGGGATGCAGCGAAGAACCAGG 15642367 Query 550150 -AGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTT 550208 |||| || || || || ||||| | || ||||| || || | || ||| | ||| Sbjct 15642366 TGGCCA-TG--AACCCGACGAATACAGTGTTCGATGCGAAGCGCCTGATCGGACGTCGTT 15642310 Query 550209 TTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTT 550268 | | || | | || |||| || |||||||| ||||| ||| | | | |||| | Sbjct 15642309 TCGACGACAGGGCAGTGCAGGACGACATGAAGCACTGGCCGTTCAAGGTGATAAATGCTG 15642250 Query 550269 CTGGAAAACCTTATATTGAAGCTACTCATGAAGGATC--TGTTAAACAA---TTTTCA-- 550321 || || || | || || | || || | | || | || | ||||| Sbjct 15642249 GAGGCAAGCCGAAGATCGAGG-------TGGAGTACCGTGGTGAGACGAAGTGTTTCAGT 15642197 Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 | || | | ||||| ||||| | |||| ||||| | || || || | | || Sbjct 15642196 GCGGAGGAGGTATCATCGATGGTGCTGTTGAAGATGAAGGAGACGGCGGAGGCGTAT-TT 15642138 Query 550382 GGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440 || ||||| || | |||||||| || || || || || || || || ||| ||||| Sbjct 15642137 GGGGAAGAAGGTGAGCGATGCAGTGATCACGGTGCCGGCGTACTTCAACGACAGTCAACG 15642078 Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500 ||| || || || ||||| || || | ||| | ||||| || || || |||||||| Sbjct 15642077 TCAGGCGACGAAGGATGCGGGTACAATATCGGGATTGAATGTGCTGCGCATAATCAATGA 15642018 Query 550501 ACCTACTGCTGCTGCACTTGCATATGG 550527 || || || || || |||| ||||| Sbjct 15642017 GCCGACGGCGGCGGCGATTGCGTATGG 15641991 Score = 89.7 bits (98), Expect = 4e-12 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || || ||||| || || ||||||||||| || || | | | ||||||| ||||| Sbjct 320949 GTCACAGATGCTGTGATTACTGTACCAGCTTACTTCAGTAGCCGCCAACGTCGGGCTACA 321008 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 | || || ||| ||||| || || ||||| || ||| | ||||| || || ||||| Sbjct 321009 ATTGACGCAGGAAAAATTGCGGGTCTGAATGTGCTGCGTCTCATCAACGAGCCGACTGCA 321068 Query 550511 GCTGCACTTGCATATGGACTTGATAAACATAA-TGATCAAGAACTTAATGTACTCATCTT 550569 ||||| ||||||| || | ||| || | || ||| | | | | ||||| ||| |||| Sbjct 321069 GCTGCCATTGCATACGG-CGTGAAGAAGAGAAGTGAGCGACAGCACAATGTGCTCGTCTT 321127 Query 550570 TGATTGTGGAGGT 550582 ||||| || ||| Sbjct 321128 CGATTGGGGTGGT 321140 Score = 89.7 bits (98), Expect = 4e-12 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || || ||||| || || ||||||||||| || || | | | ||||||| ||||| Sbjct 655360 GTCACAGATGCTGTGATTACTGTACCAGCTTACTTCAGTAGCCGCCAACGTCGGGCTACA 655301 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 | || || ||| ||||| || || ||||| || ||| | ||||| || || ||||| Sbjct 655300 ATTGACGCAGGAAAAATTGCGGGTCTGAATGTGCTGCGTCTCATCAACGAGCCGACTGCA 655241 Query 550511 GCTGCACTTGCATATGGACTTGATAAACATAA-TGATCAAGAACTTAATGTACTCATCTT 550569 ||||| ||||||| || | ||| || | || ||| | | | | ||||| ||| |||| Sbjct 655240 GCTGCCATTGCATACGG-CGTGAAGAAGAGAAGTGAGCGACAGCACAATGTGCTCGTCTT 655182 Query 550570 TGATTGTGGAGGT 550582 ||||| || ||| Sbjct 655181 CGATTGGGGTGGT 655169 Score = 89.7 bits (98), Expect = 4e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| || ||||||||||| ||||||| ||||||||||| |||||||||||||| Sbjct 13303878 GGTATTCCACCGGCTCCTCGTGGCATACCGCAGATTGAAGTTACCTTCGATATCGATGCA 13303937 Query 552567 AATGGAATT 552575 || |||||| Sbjct 13303938 AACGGAATT 13303946 >seq1207 Length=20116479 Score = 111 bits (122), Expect = 1e-18 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 563263 AGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAAT 563320 || ||||| ||||| || ||| |||| ||||||||| || | ||| |||| || Sbjct 17430754 AGAACAAGGTGAAGTGTCGACTCCTTTTG--AATATTGTAGTCGGATAGGGTTCGCCCAT 17430811 Query 563321 CTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 563380 | || | ||| || || || || ||||| | ||||||||| || || || || ||||||| Sbjct 17430812 CCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTAT 17430871 Query 563381 CTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAG 563440 | |||||||| ||| || ||| || | |||| | | | || || || | || Sbjct 17430872 CCTGAATTTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAG 17430931 Query 563441 TTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| |||||||||||||| |||||||| ||||| Sbjct 17430932 TTTTTCCAGTAAGAGTTTTTACGAAAATCTGCAT 17430965 Score = 109 bits (120), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || ||||| |||||||| || || ||||||||| |||| || | | Sbjct 13120227 AGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGC 13120286 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || | || || || ||||||||||| | |||||||| || ||||| || || Sbjct 13120287 CCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCC 13120346 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || |||||||| || ||||| |||||| | ||||| | || ||||| Sbjct 13120347 TTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTT 13120406 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||| |||||||||||||| |||||||| ||||| Sbjct 13120407 ATAGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029231639551330