Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1209 187 3e-42 >seq1209 Length=14622995 Score = 187 bits (206), Expect = 3e-42 Identities = 468/703 (67%), Gaps = 16/703 (2%) Strand=Plus/Minus Query 37002 AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATT 37061 || |||| ||| |||||||| |||||||| |||||||| | | || || ||||| Sbjct 7446777 AGTAGCCGATCGGCAACAAACCTTATGTATTGGCACATTAGGCGACAATTCATGCCAATA 7446718 Query 37062 AGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACT 37121 || || || || | ||| ||| |||||| ||| || | || || || | | Sbjct 7446717 AGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCTAACCGCCTCCCTCATA 7446658 Query 37122 ATATTAACAATAACTTCTTCAGTTGGGGGATATTTTA-AATAT-TTAAACAATAAA-CAT 37178 || | || |||| | | | | || | || | ||||| || || ||||| ||| Sbjct 7446657 ATGT---CATAAACTCTTGCTGCCGTAGGTTTGTTGACAATATGTTTAAAAATAAGGCAT 7446601 Query 37179 GCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCT 37238 |||||||| || | |||||||| | || ||||| || || ||||| | ||| Sbjct 7446600 GCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCT 7446541 Query 37239 GGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATA 37298 ||||| | ||| | || || | |||||| || | ||||| || ||||||||||||| Sbjct 7446540 GGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAAAACG 7446481 Query 37299 CCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATC 37358 |||||||| || || ||||| || || || | || | | | | || | |||| Sbjct 7446480 CCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGGGGCTTTCCTATTTGCAATC 7446421 Query 37359 CAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAG 37418 || | | |||||| || || ||||||| | || | || || || || Sbjct 7446420 CACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGCGTTAAAC 7446361 Query 37419 AGAAAGtttttttCTTCACT--ATCTGTTATATAAGTATCAATTAGTAAACTATACATTT 37476 | ||||| ||| |||| ||| | || || |||||||| || | | ||||||| Sbjct 7446360 AAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTACATTT 7446303 Query 37477 CAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATT 37536 | || ||||| ||||| | || | || | || |||||||| | ||| || | | || Sbjct 7446302 CGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGAGCCTCGGGAATTT 7446243 Query 37537 GAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAA 37596 | || |||||| |||| || || || |||||||||||| || |||||||| ||||||| Sbjct 7446242 GGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAACGATGCCATCACTGGCTGCAA 7446183 Query 37597 AGAAAGCAAGAACATATTTTATAAAATGTCTTT---CATCATTTGATAATTTTTTCCAAT 37653 | ||||| | |||||| ||| ||||| | || ||||||| | || ||||| Sbjct 7446182 AAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATT---AAGGCCTTCCCAAT 7446126 Query 37654 CATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 || | | || || | ||||| ||||| ||||| |||||||| Sbjct 7446125 CAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAA 7446083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592307789380680