Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq1210 219 3e-51
seq1207 116 2e-20
seq3 102 5e-16
>seq1210
Length=13762452
Score = 219 bits (242), Expect = 3e-51
Identities = 383/549 (70%), Gaps = 10/549 (2%)
Strand=Plus/Minus
Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392
||||||| || || || || |||| | ||| || | ||| | ||| | || || || |
Sbjct 13747419 TTGGTATCGACTTGGGGACGACTTTCTCTTGCGTTGGTGTATTTCAACACGGCAAGGTGG 13747360
Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452
| || || ||||| || ||||| ||| | || || || ||||| ||||||| || |
Sbjct 13747359 AGATCATCGCCAACGATCAAGGCAATCGTACCACTCCGAGTTATGTCGCTTTTACGGATA 13747300
Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512
| || | ||||||||| |||||||| || |||| | || ||||| || ||
Sbjct 13747299 CGGAGCGTCTTATTGGTGATGCTGCCAAGAATCAGGTGGCTATGAATCCCAGCAACACGG 13747240
Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572
| |||||||| || ||||||| || ||| |||||| |||| | || ||| |||||
Sbjct 13747239 TATTTGATGCCAAGCGATTGATAGGACGTCGTTTTGACGATAAGGCGGTGCAAGATGATA 13747180
Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAAT 474630
|| ||||||||||| |||||||| || || || |||||| | || |||| | |
Sbjct 13747179 TGAAGCATTGGCCTTTCAAGGTGATCAACTCAGGAGGCAAACCAAAGATCGAAGTTGAGT 13747120
Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCG--GAACAAATTTCTTCAATGGTTTTAGCC 474688
|| || ||||| || |||||| |||| || || | || || || ||||| || |
Sbjct 13747119 AC-CG-TGGTGAGACAAAACAA--TTCAGCGCAGAGGAGATCTCATCCATGGTACTATCA 13747064
Query 474689 AAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATTAC 474747
|| ||||| |||| || | || ||||| |||||| || | ||||| || | ||
Sbjct 13747063 AAGATGAAGGAAACTGCAGAAGCGTA-CTTGGGCAAGAAGGTGTCAGATGCGGTTGTCAC 13747005
Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807
|| || || || || |||||| |||||| || ||||| || || ||||| || |
Sbjct 13747004 AGTGCCGGCTTACTTCAATGATAGTCAACGCCAGGCAACGAAGGACGCGGGTGCGATATC 13746945
Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867
||||| ||||| ||||| ||||| || ||||| ||||| || || |||| || ||| |
Sbjct 13746944 GGGTCTGAATGTATTACGCATTATCAACGAACCGACAGCGGCTGCCATTGCCTACGGTTT 13746885
Query 474868 TGATAAGAA 474876
||||||||
Sbjct 13746884 GGATAAGAA 13746876
Score = 172 bits (190), Expect = 4e-37
Identities = 340/496 (69%), Gaps = 13/496 (3%)
Strand=Plus/Minus
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448
|| ||||| || || ||||||||||| ||| | | ||||||||| |||||| | || ||
Sbjct 7908267 GTTGAAATCATCGCAAATGACCAAGGCAATCGTATAACACCATCTTATGTTGCATTCTCT 7908208
Query 474449 G---AAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505
| | ||||| || ||||| ||||| || ||| ||||| | || ||||||
Sbjct 7908207 GGTGATGGTGAACGACTGATTGGTGATGCGGCAAAAAATCAATTGACCTCAAATCCTAAG 7908148
Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565
|||||| | || ||||| ||| || | ||||||||| ||| ||| |||| ||| ||
Sbjct 7908147 AATACTTTGTTCGATGCCAAACGACTCATTGGTCGTGATTATGACGATAAAGATGTGCAG 7908088
Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625
|||||| | || || || ||||||||||| |||||| ||||| ||
Sbjct 7908087 GGTGATATTAAACGTTATCCGTTCAAGGTGATAAACAAGAACAATAAACCGTATATGAAA 7908028
Query 474626 GCAATACACGCAGG---TGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682
| | || | ||| ||| || || | || || | |||| | ||||||
Sbjct 7908027 G---TTCAAGTAGGGAGTGAGGAGAAGGGCTTCGCCCCCGAGGAGGTTTCGGCTATGGTT 7907971
Query 474683 -TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740
|||| |||||||| ||| || ||| | |||||||| ||||| || | || |
Sbjct 7907970 CTTAGT-AAAATGAAGGAAATTGCCGAGGCC-TATCTTGGCACTGAAGTTACCCACGCTG 7907913
Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800
| | ||||| || || || || ||||| ||||||||||||| || |||||||| ||
Sbjct 7907912 TCGTCACTGTGCCCGCCTACTTCAATGACGCTCAACGTCAAGCGACCAAAGATGCTGGTG 7907853
Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860
||||| || || | ||| || || ||||| ||||||||||| || || || |||| |
Sbjct 7907852 CCATTGCTGGCCTGACTGTGTTGCGAATTATCAATGAACCAACTGCCGCTGCGATTGCCT 7907793
Query 474861 ATGGTCTTGATAAGAA 474876
||||| | ||||| ||
Sbjct 7907792 ATGGTTTGGATAAAAA 7907777
Score = 113 bits (124), Expect = 3e-19
Identities = 182/257 (71%), Gaps = 6/257 (2%)
Strand=Plus/Minus
Query 475907 GGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCA 475966
||| | || || || ||||| |||||||||| || || |||||||||| || ||
Sbjct 7907145 GGTATCGAGACTGTCGGAGGTGTTATGACTAAACTCATCCCCAGAAATACTGTCATTCCC 7907086
Query 475967 TGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAA 476026
|||||| || || | ||||| ||| | |||||||||| ||||||| || || ||
Sbjct 7907085 ACCAAAAAGTCGCAAATCTTTTCGACTGCTGCTGATAATCAGCCAACTGTCACTATTCAG 7907026
Query 476027 ATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG--AACTTTTAATC 476084
| ||||| ||||| | | ||||| || ||| || ||||| || || | |
Sbjct 7907025 GTGTTTGAGGGTGAGCGTCCGATGACTAAGGACAATCACTT-CTTGGGCAAGTTCGA--C 7906969
Query 476085 TTGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATT 476143
||| ||| ||||| || ||||| | || | |||||||| |||||||| || || |||
Sbjct 7906968 CTGACAGGCATTCCGCCGGCTCCTCGTGGTTTACCTCAAATCGAAGTTACCTTCGAAATT 7906909
Query 476144 GATGCAAATGGTATTCT 476160
|||| |||||||||||
Sbjct 7906908 GATGTGAATGGTATTCT 7906892
>seq1207
Length=20116479
Score = 116 bits (128), Expect = 2e-20
Identities = 157/219 (72%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||||||||| || ||||| ||||| || || || || ||| || |||| || |
Sbjct 13120223 ACGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGA 13120282
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| || | ||||| ||||||||||||||||| || ||||| || ||||| ||
Sbjct 13120283 CCGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACC 13120342
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||||||||||||||| || ||| ||||||| ||||| | |||||
Sbjct 13120343 CTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAG 13120402
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| |||||||| || || ||||| || |||||||| ||
Sbjct 13120403 AGTTATAGTTTTGCCAGTAAGAGTTTTCACGAAAATCTG 13120441
>seq3
Length=50134
Score = 102 bits (112), Expect = 5e-16
Identities = 358/551 (65%), Gaps = 6/551 (1%)
Strand=Plus/Plus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
||||||||| ||||| || ||||| | | | || || | ||||| ||| || |
Sbjct 18770 TGCAATTGGCATTGACTTGGGAACAGCATTCTCCTGCGTCGGTGTTTTTCAATGCGGCAG 18829
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
|| || || || |||||||||||| | || | ||||| || ||||| | || ||
Sbjct 18830 GGTGGAGATCATAGCCAATGACCAAAGCAACCGCACAACGCCTAGTTATGTAGCCTTCAC 18889
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
|| | || || || || || || || | |||| |||| | ||||| ||
Sbjct 18890 AGATAAGGAGTGCCTCATCGGTGAAGCCGCAATGAATCAGGCTGTAATCAATCCCACCAA 18949
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567
||| | || |||| || | | ||||| || |||||| ||| | || ||
Sbjct 18950 TACAGTGTTCGATGTGAAGCGTCTCATTGGGCGCCGTTTTGACGATGAGTCAGTGCAGAG 19009
Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627
||||||| || ||||| || || || |||||| | | || || ||| | || ||||
Sbjct 19010 TGATATGAAACACTGGCCCTTCAAAGTTATAAATTCTAGAGGGAAGCCAAAAATCGAAGT 19069
Query 474628 AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGC 474687
| ||| ||||| || ||||| || |||| | || || | ||||| | |
Sbjct 19070 ACAGCACTGTGGTGAGACGAAACATTTCGTTGCGGAGGAGATCTCGGCCATGGTGCTGTC 19129
Query 474688 CAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATT 474745
|||||||| | || || ||| | || | ||| | |||| || || |||||||| ||
Sbjct 19130 GAAAATGAAGGAGACGGCAGAG-GCGTA-CATGGGCGAGAAGGTCACAGATGCAGTGATC 19187
Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGC-GGGAAGAAT 474804
||||| ||||| | || || | ||| | || || || | || || | |||| ||
Sbjct 19188 ACTGTGCCAGCGCACTTCAACGTGAGCCAAAGACAGGCCACGATTGACGCAGCGAAG-AT 19246
Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864
|| ||| | ||||| | ||| | || ||||| |||||||| || ||| |||| || ||
Sbjct 19247 AGCCGGTTTAAATGTGCTGCGTCTCATCAATGAGCCAACAGCGGCTGCAATTGCATACGG 19306
Query 474865 TCTTGATAAGA 474875
| || ||||
Sbjct 19307 CATGGACAAGA 19317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268126996965116
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