Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1210 219 3e-51 seq1207 116 2e-20 seq3 102 5e-16 >seq1210 Length=13762452 Score = 219 bits (242), Expect = 3e-51 Identities = 383/549 (70%), Gaps = 10/549 (2%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||| || || || || |||| | ||| || | ||| | ||| | || || || | Sbjct 13747419 TTGGTATCGACTTGGGGACGACTTTCTCTTGCGTTGGTGTATTTCAACACGGCAAGGTGG 13747360 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| || ||||| ||| | || || || ||||| ||||||| || | Sbjct 13747359 AGATCATCGCCAACGATCAAGGCAATCGTACCACTCCGAGTTATGTCGCTTTTACGGATA 13747300 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||||||||| |||||||| || |||| | || ||||| || || Sbjct 13747299 CGGAGCGTCTTATTGGTGATGCTGCCAAGAATCAGGTGGCTATGAATCCCAGCAACACGG 13747240 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | |||||||| || ||||||| || ||| |||||| |||| | || ||| ||||| Sbjct 13747239 TATTTGATGCCAAGCGATTGATAGGACGTCGTTTTGACGATAAGGCGGTGCAAGATGATA 13747180 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAAT 474630 || ||||||||||| |||||||| || || || |||||| | || |||| | | Sbjct 13747179 TGAAGCATTGGCCTTTCAAGGTGATCAACTCAGGAGGCAAACCAAAGATCGAAGTTGAGT 13747120 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCG--GAACAAATTTCTTCAATGGTTTTAGCC 474688 || || ||||| || |||||| |||| || || | || || || ||||| || | Sbjct 13747119 AC-CG-TGGTGAGACAAAACAA--TTCAGCGCAGAGGAGATCTCATCCATGGTACTATCA 13747064 Query 474689 AAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATTAC 474747 || ||||| |||| || | || ||||| |||||| || | ||||| || | || Sbjct 13747063 AAGATGAAGGAAACTGCAGAAGCGTA-CTTGGGCAAGAAGGTGTCAGATGCGGTTGTCAC 13747005 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || || || || || |||||| |||||| || ||||| || || ||||| || | Sbjct 13747004 AGTGCCGGCTTACTTCAATGATAGTCAACGCCAGGCAACGAAGGACGCGGGTGCGATATC 13746945 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 ||||| ||||| ||||| ||||| || ||||| ||||| || || |||| || ||| | Sbjct 13746944 GGGTCTGAATGTATTACGCATTATCAACGAACCGACAGCGGCTGCCATTGCCTACGGTTT 13746885 Query 474868 TGATAAGAA 474876 |||||||| Sbjct 13746884 GGATAAGAA 13746876 Score = 172 bits (190), Expect = 4e-37 Identities = 340/496 (69%), Gaps = 13/496 (3%) Strand=Plus/Minus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| || || ||||||||||| ||| | | ||||||||| |||||| | || || Sbjct 7908267 GTTGAAATCATCGCAAATGACCAAGGCAATCGTATAACACCATCTTATGTTGCATTCTCT 7908208 Query 474449 G---AAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 | | ||||| || ||||| ||||| || ||| ||||| | || |||||| Sbjct 7908207 GGTGATGGTGAACGACTGATTGGTGATGCGGCAAAAAATCAATTGACCTCAAATCCTAAG 7908148 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 |||||| | || ||||| ||| || | ||||||||| ||| ||| |||| ||| || Sbjct 7908147 AATACTTTGTTCGATGCCAAACGACTCATTGGTCGTGATTATGACGATAAAGATGTGCAG 7908088 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 |||||| | || || || ||||||||||| |||||| ||||| || Sbjct 7908087 GGTGATATTAAACGTTATCCGTTCAAGGTGATAAACAAGAACAATAAACCGTATATGAAA 7908028 Query 474626 GCAATACACGCAGG---TGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 | | || | ||| ||| || || | || || | |||| | |||||| Sbjct 7908027 G---TTCAAGTAGGGAGTGAGGAGAAGGGCTTCGCCCCCGAGGAGGTTTCGGCTATGGTT 7907971 Query 474683 -TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 |||| |||||||| ||| || ||| | |||||||| ||||| || | || | Sbjct 7907970 CTTAGT-AAAATGAAGGAAATTGCCGAGGCC-TATCTTGGCACTGAAGTTACCCACGCTG 7907913 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | | ||||| || || || || ||||| ||||||||||||| || |||||||| || Sbjct 7907912 TCGTCACTGTGCCCGCCTACTTCAATGACGCTCAACGTCAAGCGACCAAAGATGCTGGTG 7907853 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 ||||| || || | ||| || || ||||| ||||||||||| || || || |||| | Sbjct 7907852 CCATTGCTGGCCTGACTGTGTTGCGAATTATCAATGAACCAACTGCCGCTGCGATTGCCT 7907793 Query 474861 ATGGTCTTGATAAGAA 474876 ||||| | ||||| || Sbjct 7907792 ATGGTTTGGATAAAAA 7907777 Score = 113 bits (124), Expect = 3e-19 Identities = 182/257 (71%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 475907 GGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCA 475966 ||| | || || || ||||| |||||||||| || || |||||||||| || || Sbjct 7907145 GGTATCGAGACTGTCGGAGGTGTTATGACTAAACTCATCCCCAGAAATACTGTCATTCCC 7907086 Query 475967 TGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAA 476026 |||||| || || | ||||| ||| | |||||||||| ||||||| || || || Sbjct 7907085 ACCAAAAAGTCGCAAATCTTTTCGACTGCTGCTGATAATCAGCCAACTGTCACTATTCAG 7907026 Query 476027 ATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG--AACTTTTAATC 476084 | ||||| ||||| | | ||||| || ||| || ||||| || || | | Sbjct 7907025 GTGTTTGAGGGTGAGCGTCCGATGACTAAGGACAATCACTT-CTTGGGCAAGTTCGA--C 7906969 Query 476085 TTGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATT 476143 ||| ||| ||||| || ||||| | || | |||||||| |||||||| || || ||| Sbjct 7906968 CTGACAGGCATTCCGCCGGCTCCTCGTGGTTTACCTCAAATCGAAGTTACCTTCGAAATT 7906909 Query 476144 GATGCAAATGGTATTCT 476160 |||| ||||||||||| Sbjct 7906908 GATGTGAATGGTATTCT 7906892 >seq1207 Length=20116479 Score = 116 bits (128), Expect = 2e-20 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || ||||| ||||| || || || || ||| || |||| || | Sbjct 13120223 ACGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGA 13120282 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || | ||||| ||||||||||||||||| || ||||| || ||||| || Sbjct 13120283 CCGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACC 13120342 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||||||||| || ||| ||||||| ||||| | ||||| Sbjct 13120343 CTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAG 13120402 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| || || ||||| || |||||||| || Sbjct 13120403 AGTTATAGTTTTGCCAGTAAGAGTTTTCACGAAAATCTG 13120441 >seq3 Length=50134 Score = 102 bits (112), Expect = 5e-16 Identities = 358/551 (65%), Gaps = 6/551 (1%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||||||||| ||||| || ||||| | | | || || | ||||| ||| || | Sbjct 18770 TGCAATTGGCATTGACTTGGGAACAGCATTCTCCTGCGTCGGTGTTTTTCAATGCGGCAG 18829 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || || || |||||||||||| | || | ||||| || ||||| | || || Sbjct 18830 GGTGGAGATCATAGCCAATGACCAAAGCAACCGCACAACGCCTAGTTATGTAGCCTTCAC 18889 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || | || || || || || || || | |||| |||| | ||||| || Sbjct 18890 AGATAAGGAGTGCCTCATCGGTGAAGCCGCAATGAATCAGGCTGTAATCAATCCCACCAA 18949 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 ||| | || |||| || | | ||||| || |||||| ||| | || || Sbjct 18950 TACAGTGTTCGATGTGAAGCGTCTCATTGGGCGCCGTTTTGACGATGAGTCAGTGCAGAG 19009 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 ||||||| || ||||| || || || |||||| | | || || ||| | || |||| Sbjct 19010 TGATATGAAACACTGGCCCTTCAAAGTTATAAATTCTAGAGGGAAGCCAAAAATCGAAGT 19069 Query 474628 AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGC 474687 | ||| ||||| || ||||| || |||| | || || | ||||| | | Sbjct 19070 ACAGCACTGTGGTGAGACGAAACATTTCGTTGCGGAGGAGATCTCGGCCATGGTGCTGTC 19129 Query 474688 CAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAATT 474745 |||||||| | || || ||| | || | ||| | |||| || || |||||||| || Sbjct 19130 GAAAATGAAGGAGACGGCAGAG-GCGTA-CATGGGCGAGAAGGTCACAGATGCAGTGATC 19187 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGC-GGGAAGAAT 474804 ||||| ||||| | || || | ||| | || || || | || || | |||| || Sbjct 19188 ACTGTGCCAGCGCACTTCAACGTGAGCCAAAGACAGGCCACGATTGACGCAGCGAAG-AT 19246 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 || ||| | ||||| | ||| | || ||||| |||||||| || ||| |||| || || Sbjct 19247 AGCCGGTTTAAATGTGCTGCGTCTCATCAATGAGCCAACAGCGGCTGCAATTGCATACGG 19306 Query 474865 TCTTGATAAGA 474875 | || |||| Sbjct 19307 CATGGACAAGA 19317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268126996965116