Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1207 140 4e-28 >seq1207 Length=20116479 Score = 140 bits (154), Expect = 4e-28 Identities = 413/631 (65%), Gaps = 13/631 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||||| ||||| ||||| ||| | ||||||||||| || || || ||||| ||| Sbjct 7938716 CCCCAGTATATGTTTATGCGCGTCTCTATCGGCATCCATGGTGAGGATCTTGATGCTGCT 7938775 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| ||| | |||||| || ||| |||| || |||| || || || Sbjct 7938776 ATTGAGACGTACAATCTCATGTCCGAAAAGTGGTTGGTTCATGCTTCACCCACTCTTTTT 7938835 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 |||||||| || || | || ||||||||||| ||||| | | | | || || ||| Sbjct 7938836 AATGCTGGGACGCCTAACCCTCAGATGTCCAGCTGCTTTTTGCTTACGATGAAAGATGAC 7938895 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 ||| | || || |||| || || | | ||||| | |||||||| | ||||| Sbjct 7938896 AGTATCGAGGGCATATATGATACGCTCAAACAATGTGCACTTATCTCAAAAAGTGCTGGT 7938955 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511 || ||||| | | | ||| | | | || || || ||||| ||| Sbjct 7938956 GGAATTGGTCTCAATGTTCATTGTATCCGGAGTAAGGGCACTTTCATCGCTGGGACCAAT 7939015 Query 75512 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 75571 || | || | ||| || | || |||||||| || || ||| || || || ||||| Sbjct 7939016 GGCGAGTCCAACGGTCTTGTGCCGATGCTTCGGGTCTTCAACAGTACTGCTCGGTATGTT 7939075 Query 75572 AATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 |||| | ||| ||| | | || || | || | || | ||||| |||||| Sbjct 7939076 GATCAGGGGGGCAATAAGCGACCC---GGTGCCTTTGCCATTTATCTCGAACCGTGGCAT 7939132 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 | ||| | || |||| | || ||||| ||| |||| ||| || ||||| Sbjct 7939133 CCGGATGTGCTGCAGTTTGTGGAATTACGGAAGAACACTGGTGCCGAGGAAGCTCGTGCG 7939192 Query 75686 AGAGATCTCTTTTCAT-CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 ||||||| ||| | | | || |||||||| || || ||||||||||| ||||| | || Sbjct 7939193 CGAGATCT-TTTCCTTGCACTTTGGATTCCGGATCTATTCATGAAGCGTGTTGAAGCAGG 7939251 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTCTCTCCGACGCGGTGGGTG 75803 ||| | |||| | || | || || || || || ||||| | ||| | ||| | Sbjct 7939252 TGGCCCATGGACCTTTATGGACCCCCACGAATGC-CCCGGTCTTGCTGACTCTTGGGGGG 7939310 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGA 75834 |||| |||||| | |||||||||||||| || Sbjct 7939311 AGGAATTTGAAACGCTCTACACAAAGTACGA 7939341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596560524684960