Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 113 1e-19
seq1211 86.0 2e-11
>seq1207
Length=20116479
Score = 113 bits (124), Expect = 1e-19
Identities = 214/311 (69%), Gaps = 8/311 (3%)
Strand=Plus/Minus
Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633
|||||| ||| |||| ||||||||| || ||||||||| | ||| || ||||| ||
Sbjct 7002909 TTCCATGGCCTTCATTAGACGACGCTGGATGTAACCAGTTTCGGCTGTCTTGACAGCCGT 7002850
Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693
|||||| | ||| ||||||||||||| || || ||||| | || ||| || ||
Sbjct 7002849 ATCAATCAAACCTTCACGACCACCCATTGCGTGAAAGAAGAATTCAGTTGGTGTAAGACC 7002790
Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTG-G 302749
| | ||||| |||| || ||||| | | ||||| || |||||| ||||
Sbjct 7002789 GGCTAGGTAGGAGTTCTCGACAAAACCTCTTGATTCGGGACCGTAATCGT----CTTGAA 7002734
Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809
|||| || || || || | || | | | ||| |||| | ||| || || || || ||||
Sbjct 7002733 TAAAATGGGGAAGAGTGCGGTGCCTAAAACCGAATGGCACACGTTTGCCTTCGACATTCT 7002674
Query 302810 GCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCAT 302869
|||| || | || | || | ||| ||||| |||| |||||| ||||| |||
Sbjct 7002673 GCTGCCCGACACAAGCGATAACCTGAGAAATGTTTATTCTTGAGCCCTTTGAGCCCGCAA 7002614
Query 302870 TTACCATAATA 302880
|||||||||
Sbjct 7002613 CAACCATAATA 7002603
>seq1211
Length=11859842
Score = 86.0 bits (94), Expect = 2e-11
Identities = 116/159 (73%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 251829 CTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTC 251888
|||| ||| || | || ||||| ||||||||||| || || |||||||| || |||||
Sbjct 3880972 CTCTATCAAGTGACCAATTGTCATTCGACTGGGAATGGCGTGAGGATTGATAATAATGTC 3881031
Query 251889 GGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAG 251947
||| | | || ||| ||||||||||||||||| | || || | | | || ||
Sbjct 3881032 GGGAGTGATGCCCTCACAAGTGAAGGGCATATCCTCCT-GTCGGTAGAGGATGCCGCAAG 3881090
Query 251948 TTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAA 251986
| || ||||| |||||||| || ||||| |||||||
Sbjct 3881091 TACCTTTTTGACCGTGACGCGAGGCAAACTTGTCACCAA 3881129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471794650224129
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |