Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1207 113 1e-19 seq1211 86.0 2e-11 >seq1207 Length=20116479 Score = 113 bits (124), Expect = 1e-19 Identities = 214/311 (69%), Gaps = 8/311 (3%) Strand=Plus/Minus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 |||||| ||| |||| ||||||||| || ||||||||| | ||| || ||||| || Sbjct 7002909 TTCCATGGCCTTCATTAGACGACGCTGGATGTAACCAGTTTCGGCTGTCTTGACAGCCGT 7002850 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 |||||| | ||| ||||||||||||| || || ||||| | || ||| || || Sbjct 7002849 ATCAATCAAACCTTCACGACCACCCATTGCGTGAAAGAAGAATTCAGTTGGTGTAAGACC 7002790 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTG-G 302749 | | ||||| |||| || ||||| | | ||||| || |||||| |||| Sbjct 7002789 GGCTAGGTAGGAGTTCTCGACAAAACCTCTTGATTCGGGACCGTAATCGT----CTTGAA 7002734 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 |||| || || || || | || | | | ||| |||| | ||| || || || || |||| Sbjct 7002733 TAAAATGGGGAAGAGTGCGGTGCCTAAAACCGAATGGCACACGTTTGCCTTCGACATTCT 7002674 Query 302810 GCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCAT 302869 |||| || | || | || | ||| ||||| |||| |||||| ||||| ||| Sbjct 7002673 GCTGCCCGACACAAGCGATAACCTGAGAAATGTTTATTCTTGAGCCCTTTGAGCCCGCAA 7002614 Query 302870 TTACCATAATA 302880 ||||||||| Sbjct 7002613 CAACCATAATA 7002603 >seq1211 Length=11859842 Score = 86.0 bits (94), Expect = 2e-11 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 251829 CTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTC 251888 |||| ||| || | || ||||| ||||||||||| || || |||||||| || ||||| Sbjct 3880972 CTCTATCAAGTGACCAATTGTCATTCGACTGGGAATGGCGTGAGGATTGATAATAATGTC 3881031 Query 251889 GGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAG 251947 ||| | | || ||| ||||||||||||||||| | || || | | | || || Sbjct 3881032 GGGAGTGATGCCCTCACAAGTGAAGGGCATATCCTCCT-GTCGGTAGAGGATGCCGCAAG 3881090 Query 251948 TTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAA 251986 | || ||||| |||||||| || ||||| ||||||| Sbjct 3881091 TACCTTTTTGACCGTGACGCGAGGCAAACTTGTCACCAA 3881129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471794650224129