Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1213 104 2e-17 seq1207 100 3e-16 >seq1213 Length=7437389 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || |||||||| | || || || | | Sbjct 1838324 ATGCAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGT 1838265 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | |||||| || || ||||| |||||||||||||| || || || ||||| Sbjct 1838264 GACTCGATAGAAAACGTGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCAG 1838205 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || ||| |||| || | | | | || || || ||| Sbjct 1838204 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1838145 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| |||||||| ||| ||||| Sbjct 1838144 ATTCAGAAGGAGTCGACACTTCACCTGGTG 1838115 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24702 CGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA 24761 |||||||||||||| | || ||||| || || || || || || || || || || | | Sbjct 1844116 CGATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGA 1844175 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||| | | || | || || |||||||| ||||| || || || || || |||| Sbjct 1844176 GTGACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATC 1844235 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || ||| |||| || || || || ||| |||| || | | | | || || || | Sbjct 1844236 AGCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACA 1844295 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 | ||||| ||||| |||||||| ||| ||||| Sbjct 1844296 ATATTCAGAAGGAGTCGACACTTCACCTGGTG 1844327 >seq1207 Length=20116479 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || |||||||| || || || || || | | Sbjct 17430965 ATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAGT 17430906 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || | | || |||| ||| | ||| || || || ||||| || ||||| || ||||| Sbjct 17430905 GATTCCATCGAGAACGTGAAAGCGAAA-ATTCAGGATAAAGAGGGTATACCGCCAGATCA 17430847 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||| | ||||| || || || || | |||||| | ||| | | || || || || Sbjct 17430846 GCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAA 17430787 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||||||||| |||||||| ||| | || | || | || |||||| Sbjct 17430786 TATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACTACGAGGAGGC 17430738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449890755932760