Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1213 134 9e-27 seq1207 98.7 6e-16 >seq1213 Length=7437389 Score = 134 bits (148), Expect = 9e-27 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||||||||| ||||| || ||| |||| | || Sbjct 1838113 AGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 1838172 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| ||||| ||||| || ||||| || | || | || || ||||| Sbjct 1838173 TCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCT 1838232 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||| || || ||| | ||||||| ||| | | ||| || || | || || ||| Sbjct 1838233 TGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTC 1838292 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 ||||| ||||| ||||| || || |||||||||| Sbjct 1838293 TTTCCAGTGAGTGTCTTCACGAATATCTGCATGA 1838326 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||||||||| ||||| || ||| |||| | || Sbjct 1844557 AGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 1844498 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| ||||| ||||| || ||||| || | || | ||||||||||| Sbjct 1844497 TCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCC 1844438 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||| || || || ||||| ||| | | ||| || |||| || |||| Sbjct 1844437 TGGATCTTCGCTTTCAC--ATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGG 1844380 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || ||||| |||||||| ||||| Sbjct 1844379 TCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346 Score = 129 bits (142), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || ||||||||||||||| ||||| || ||| |||| | || Sbjct 1837885 AGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 1837944 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| ||||| ||||| || ||||| || | || | ||||||||||| Sbjct 1837945 TCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCC 1838004 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || ||||| ||| | | ||| || |||| || |||| Sbjct 1838005 TGGATCTTCGCCTTCAC--ATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGG 1838062 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || ||||| |||||||| ||||| Sbjct 1838063 TCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096 Score = 129 bits (142), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||||| || |||||||||||| || ||||| || ||| |||| | || Sbjct 1844329 AGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCGTCT 1844270 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| ||||| ||||| || ||||| || | || | ||||||||||| Sbjct 1844269 TCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCC 1844210 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || ||||| ||| | | ||| || |||| || |||| Sbjct 1844209 TGGATCTTCGCCTTCAC--ATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGG 1844152 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || || ||||| |||||||||||||| Sbjct 1844151 TCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118 Score = 114 bits (126), Expect = 8e-21 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||| ||||| ||||| || ||| |||| | || |||| |||||||| ||||| Sbjct 1844765 CTCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAA 1844706 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || ||||| || | || | ||||||||||| | || || || || | Sbjct 1844705 TATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC--A 1844648 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || ||||| ||| | | ||| || |||| || |||||||| || || || ||||| Sbjct 1844647 TTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTC 1844588 Query 34964 ACAAAGATCTGCAT 34977 |||||||| ||||| Sbjct 1844587 ACAAAGATTTGCAT 1844574 >seq1207 Length=20116479 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| |||||||||||| || ||||| |||| | ||| |||| Sbjct 13120233 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCC 13120292 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || || || || || || ||||| ||| | || | ||||||||||| Sbjct 13120293 TCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCT 13120352 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || || ||| | |||||| |||| ||||| | Sbjct 13120353 TGAATCTTAGCCTTTAC--ATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTATAG 13120410 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || || || || || || || || ||||||||| Sbjct 13120411 TTTTGCCAGTAAGAGTTTTCACGAAAATCTGCATG 13120445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325687969263323