Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1210 172 4e-37
seq1211 167 2e-35
seq1208 123 2e-22
>seq1210
Length=13762452
Score = 172 bits (190), Expect = 4e-37
Identities = 371/549 (68%), Gaps = 8/549 (1%)
Strand=Plus/Plus
Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334
||||| ||| |||||||| | |||||| | || | ||| | || | |||| ||
Sbjct 7907723 ACATCGAAGGTGCCACCACCAAGATCAAATACGAGGATGTTCTTCTCAGTATCTT---TT 7907779
Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394
||||| | |||||| |||| ||||| |||||||||||||| ||||||| ||| ||| |
Sbjct 7907780 TTATCCAAACCATAGGCAATCGCAGCGGCAGTTGGTTCATTGATAATTCGCAACACAGTC 7907839
Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454
|| |||||||| || |||||||| || ||||| | ||| | || || || || ||
Sbjct 7907840 AGGCCAGCAATGGCACCAGCATCTTTGGTCGCTTGACGTTGAGCGTCATTGAAGTAGGCG 7907899
Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTC 282514
|| ||||| | || || | || ||||| | |||| ||| || || ||| |||
Sbjct 7907900 GGCACAGTGACGACAGCGTGGGTAACTTCAGTGCCAAGATAGGCCTCGGCAATTTCCTTC 7907959
Query 282515 ATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCA-TTTTG 282573
|||||||| | || ||| | |||| | || || | | ||| ||| |
Sbjct 7907960 ATTTTACTAAGAACCATAGCCGAAACCTCCTCGGGGGCGAAGCCCTTCTCCTCACTCCCT 7908019
Query 282574 ATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTT 282633
| ||| |||| | ||| |||||||| || || || || || || || |||
Sbjct 7908020 ACTTGA-ACTTTCATATACGGTTTATTGTTCTTGTTTATCACCTTGAACGGATAACGTTT 7908078
Query 282634 CATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAA 282693
||||| || ||| || || | | |||| | |||||| | |||||| ||||| ||
Sbjct 7908079 AATATCACCCTGCACATCTTTATCGTCATAATCACGACCAATGAGTCGTTTGGCATCGAA 7908138
Query 282694 AATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT- 282752
| |||||| | ||||| | ||||| ||| || ||||| |||||||| |||
Sbjct 7908139 CAAAGTATTCTTAGGATTTGAGGTCAATTGATTTTTTGCCGCATCACCAATCAGTCGTTC 7908198
Query 282753 -CTGTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 282810
| || | | |||| |||||| ||||| ||| | ||||| ||||| ||||| || ||
Sbjct 7908199 ACCATCACCAGAGAATGCAACATAAGATGGTGTTATACGATTGCCTTGGTCATTTGCGAT 7908258
Query 282811 AATTTCAAC 282819
||||||||
Sbjct 7908259 GATTTCAAC 7908267
>seq1211
Length=11859842
Score = 167 bits (184), Expect = 2e-35
Identities = 365/547 (67%), Gaps = 0/547 (0%)
Strand=Plus/Plus
Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392
|||| || | |||||| || | |||||| || || || || |||| || | || || |
Sbjct 8946088 TTTTGTCCAAACCATATGCGATAGCAGCTGCCGTGGGCTCGTTAACGATACGCAGCACGT 8946147
Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452
| | ||| |||| | | ||||||||| | || || |||| ||| ||| || || |||
Sbjct 8946148 TTAAACCCGCAACTTTCCCTGCATCTATCGTCGCCTGTCGTTGCCTATCATTGAAGCATG 8946207
Query 282453 CAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTT 282512
| || || ||| | || |||||||| |||| | | || | | | || |||||| | ||
Sbjct 8946208 CCGGTACTGTAGTTACTGCATCTGTCACTTTTGTGCCCAAAAACGCTTCTGCTGTCTCTT 8946267
Query 282513 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTT 282572
|||| || | | ||| || || || | ||||| | | | ||| | |||||
Sbjct 8946268 TCATCTTCAGCAGCACCATGGACGAGATCTCTTCTGCAATGAACTTCTTTGTCTCATTAA 8946327
Query 282573 GATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATT 282632
|| | ||| ||| | ||||| || ||| | ||||| ||||||||||
Sbjct 8946328 GAAACTCTACCCCAATCTTCGGTTTCCCTTCAGAATTTACCACTTTGAATGGCCAATGCC 8946387
Query 282633 TCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAA 282692
|| | || ||| || | ||||| | | | || || || || ||||| ||||
Sbjct 8946388 TCTTGTCGTCTTGGACTTCTACATCATTGATTTGGCGTCCGATCAAACGCTTTGCGTCAA 8946447
Query 282693 AAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT 282752
||| ||||| ||||| || | | |||||| | || || || || || | ||| | |
Sbjct 8946448 AAACCGTATTAGTTGGGTTTAAAGTAGCTTGGTTCTTTGCAGCCTCACCGACGAGACGCT 8946507
Query 282753 CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAA 282812
|| | ||||| || | ||||| || ||| |||| ||| |||||||| |||||||
Sbjct 8946508 CTTTATCTGTGAAGGCTACATAACCGGGTGTTATGCGGAGACCCTGATCATTGGCAATAA 8946567
Query 282813 TTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATAC 282872
|||| || || ||||| || | ||||| || || ||| ||||| ||||| |||||||
Sbjct 8946568 TTTCCACCTTGCCATTCTGAAAAACACCGACGCACGAAAAGGTTGTCCCTAAGTCAATAC 8946627
Query 282873 CAATAGC 282879
| || ||
Sbjct 8946628 CGATGGC 8946634
>seq1208
Length=17597482
Score = 123 bits (136), Expect = 2e-22
Identities = 354/540 (66%), Gaps = 6/540 (1%)
Strand=Plus/Plus
Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403
|| || |||| ||||| || ||||| ||||| || | | || ||||| | ||| ||
Sbjct 17581185 CCGTATGCAATGGCAGCCGCTGTTGGCTCATTGATGAGCCGCAGCACATTTAAACCGGCT 17581244
Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463
||| || | || ||| ||||||| |||||||| |||| || || || || |||||
Sbjct 17581245 ATTTTTGCCGCGTCTATAGTGGCCTGTCTTTGGCCCACGTTGAAGTACGCTGGCACAGTG 17581304
Query 282464 ATAACGGCATCTGTTAC-TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACT 282522
|| || |||||||| || |||| ||| | || | || || | ||||| || |
Sbjct 17581305 ATTACCGCATCTGTGACCTTCTCTTCTAGG-TACGTCTCCGCCGTCTCCTTCATCTTCGT 17581363
Query 282523 TAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATAC 282582
| | ||| | || || || || | | |||||| | |||| | |||
Sbjct 17581364 CAGCACCATGGCCGAGATCTGCTCCGCAACGATTTGCTTTGTTTCACCACAGTGCTGTAC 17581423
Query 282583 TTCAAAATATGGTTTA--TTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCT 282640
||| | | ||| ||| || | || || |||||||| || ||||| | |||||||||
Sbjct 17581424 TTCGATTTTTGGCTTACCTTTCGAA--TTTATAACTTTGAAGGGCCAGTGTTTCATATCG 17581481
Query 282641 GATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTA 282700
|| || || ||| ||||| | || || | ||||| || | |||| |||
Sbjct 17581482 CTCTGCACTTCTTCGTCGTTAAAGCTGCGTCCGATCAGACGTTTCACACCGAAAACCGTA 17581541
Query 282701 TTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCT 282760
||||| ||||| || || || || | | | || || || || || || || | | ||
Sbjct 17581542 TTGGTCGGATTCACAGCGGCCTGGTTTATTGCGGCTTCACCGATAAGGCGTCCCTTGTCA 17581601
Query 282761 GTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACT 282820
|| || | |||| | || ||||||||||| || ||||| || || || || | ||
Sbjct 17581602 GTGAAGGCAACACAACTCGGGGTTGTGCGATTGCCCTGATCGTTGGCTATGATCTTCACC 17581661
Query 282821 TTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880
|| ||||| | ||||| |||||| || ||||| || || || || || ||||||
Sbjct 17581662 CTATTTTTTTGGAAAACACCCACACAAGAGAAGGTTGTACCCAAGTCGATGCCGATAGCA 17581721
Score = 86.0 bits (94), Expect = 5e-11
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 282337 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 282396
||| ||||| || || | ||| |||||||| |||||||| || | | | |||||| ||
Sbjct 13302960 ATCCAGACCGTAAGCGAGAGCCGCAGCAGTAGGTTCATTGATGACACGAAGAACATTCAG 13302901
Query 282397 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 282456
|| || || || |||||||| || || || | || ||||| || ||||| |||||
Sbjct 13302900 GCCGGCTATCTGACCAGCATCTTTGGTAGCCTGCCGCTGGGAATCATTGAAATAGGCAGG 13302841
Query 282457 AACAGTAATAACGGC 282471
|||||| ||||| ||
Sbjct 13302840 AACAGTGATAACCGC 13302826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740570650443042
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |