Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1210 172 4e-37 seq1211 167 2e-35 seq1208 123 2e-22 >seq1210 Length=13762452 Score = 172 bits (190), Expect = 4e-37 Identities = 371/549 (68%), Gaps = 8/549 (1%) Strand=Plus/Plus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 ||||| ||| |||||||| | |||||| | || | ||| | || | |||| || Sbjct 7907723 ACATCGAAGGTGCCACCACCAAGATCAAATACGAGGATGTTCTTCTCAGTATCTT---TT 7907779 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 ||||| | |||||| |||| ||||| |||||||||||||| ||||||| ||| ||| | Sbjct 7907780 TTATCCAAACCATAGGCAATCGCAGCGGCAGTTGGTTCATTGATAATTCGCAACACAGTC 7907839 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || |||||||| || |||||||| || ||||| | ||| | || || || || || Sbjct 7907840 AGGCCAGCAATGGCACCAGCATCTTTGGTCGCTTGACGTTGAGCGTCATTGAAGTAGGCG 7907899 Query 282455 GGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTC 282514 || ||||| | || || | || ||||| | |||| ||| || || ||| ||| Sbjct 7907900 GGCACAGTGACGACAGCGTGGGTAACTTCAGTGCCAAGATAGGCCTCGGCAATTTCCTTC 7907959 Query 282515 ATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCA-TTTTG 282573 |||||||| | || ||| | |||| | || || | | ||| ||| | Sbjct 7907960 ATTTTACTAAGAACCATAGCCGAAACCTCCTCGGGGGCGAAGCCCTTCTCCTCACTCCCT 7908019 Query 282574 ATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTT 282633 | ||| |||| | ||| |||||||| || || || || || || || ||| Sbjct 7908020 ACTTGA-ACTTTCATATACGGTTTATTGTTCTTGTTTATCACCTTGAACGGATAACGTTT 7908078 Query 282634 CATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAA 282693 ||||| || ||| || || | | |||| | |||||| | |||||| ||||| || Sbjct 7908079 AATATCACCCTGCACATCTTTATCGTCATAATCACGACCAATGAGTCGTTTGGCATCGAA 7908138 Query 282694 AATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT- 282752 | |||||| | ||||| | ||||| ||| || ||||| |||||||| ||| Sbjct 7908139 CAAAGTATTCTTAGGATTTGAGGTCAATTGATTTTTTGCCGCATCACCAATCAGTCGTTC 7908198 Query 282753 -CTGTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 282810 | || | | |||| |||||| ||||| ||| | ||||| ||||| ||||| || || Sbjct 7908199 ACCATCACCAGAGAATGCAACATAAGATGGTGTTATACGATTGCCTTGGTCATTTGCGAT 7908258 Query 282811 AATTTCAAC 282819 |||||||| Sbjct 7908259 GATTTCAAC 7908267 >seq1211 Length=11859842 Score = 167 bits (184), Expect = 2e-35 Identities = 365/547 (67%), Gaps = 0/547 (0%) Strand=Plus/Plus Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 |||| || | |||||| || | |||||| || || || || |||| || | || || | Sbjct 8946088 TTTTGTCCAAACCATATGCGATAGCAGCTGCCGTGGGCTCGTTAACGATACGCAGCACGT 8946147 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | | ||| |||| | | ||||||||| | || || |||| ||| ||| || || ||| Sbjct 8946148 TTAAACCCGCAACTTTCCCTGCATCTATCGTCGCCTGTCGTTGCCTATCATTGAAGCATG 8946207 Query 282453 CAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTT 282512 | || || ||| | || |||||||| |||| | | || | | | || |||||| | || Sbjct 8946208 CCGGTACTGTAGTTACTGCATCTGTCACTTTTGTGCCCAAAAACGCTTCTGCTGTCTCTT 8946267 Query 282513 TCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTT 282572 |||| || | | ||| || || || | ||||| | | | ||| | ||||| Sbjct 8946268 TCATCTTCAGCAGCACCATGGACGAGATCTCTTCTGCAATGAACTTCTTTGTCTCATTAA 8946327 Query 282573 GATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATT 282632 || | ||| ||| | ||||| || ||| | ||||| |||||||||| Sbjct 8946328 GAAACTCTACCCCAATCTTCGGTTTCCCTTCAGAATTTACCACTTTGAATGGCCAATGCC 8946387 Query 282633 TCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAA 282692 || | || ||| || | ||||| | | | || || || || ||||| |||| Sbjct 8946388 TCTTGTCGTCTTGGACTTCTACATCATTGATTTGGCGTCCGATCAAACGCTTTGCGTCAA 8946447 Query 282693 AAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT 282752 ||| ||||| ||||| || | | |||||| | || || || || || | ||| | | Sbjct 8946448 AAACCGTATTAGTTGGGTTTAAAGTAGCTTGGTTCTTTGCAGCCTCACCGACGAGACGCT 8946507 Query 282753 CTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAA 282812 || | ||||| || | ||||| || ||| |||| ||| |||||||| ||||||| Sbjct 8946508 CTTTATCTGTGAAGGCTACATAACCGGGTGTTATGCGGAGACCCTGATCATTGGCAATAA 8946567 Query 282813 TTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATAC 282872 |||| || || ||||| || | ||||| || || ||| ||||| ||||| ||||||| Sbjct 8946568 TTTCCACCTTGCCATTCTGAAAAACACCGACGCACGAAAAGGTTGTCCCTAAGTCAATAC 8946627 Query 282873 CAATAGC 282879 | || || Sbjct 8946628 CGATGGC 8946634 >seq1208 Length=17597482 Score = 123 bits (136), Expect = 2e-22 Identities = 354/540 (66%), Gaps = 6/540 (1%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || |||| ||||| || ||||| ||||| || | | || ||||| | ||| || Sbjct 17581185 CCGTATGCAATGGCAGCCGCTGTTGGCTCATTGATGAGCCGCAGCACATTTAAACCGGCT 17581244 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| || | || ||| ||||||| |||||||| |||| || || || || ||||| Sbjct 17581245 ATTTTTGCCGCGTCTATAGTGGCCTGTCTTTGGCCCACGTTGAAGTACGCTGGCACAGTG 17581304 Query 282464 ATAACGGCATCTGTTAC-TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACT 282522 || || |||||||| || |||| ||| | || | || || | ||||| || | Sbjct 17581305 ATTACCGCATCTGTGACCTTCTCTTCTAGG-TACGTCTCCGCCGTCTCCTTCATCTTCGT 17581363 Query 282523 TAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATAC 282582 | | ||| | || || || || | | |||||| | |||| | ||| Sbjct 17581364 CAGCACCATGGCCGAGATCTGCTCCGCAACGATTTGCTTTGTTTCACCACAGTGCTGTAC 17581423 Query 282583 TTCAAAATATGGTTTA--TTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCT 282640 ||| | | ||| ||| || | || || |||||||| || ||||| | ||||||||| Sbjct 17581424 TTCGATTTTTGGCTTACCTTTCGAA--TTTATAACTTTGAAGGGCCAGTGTTTCATATCG 17581481 Query 282641 GATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTA 282700 || || || ||| ||||| | || || | ||||| || | |||| ||| Sbjct 17581482 CTCTGCACTTCTTCGTCGTTAAAGCTGCGTCCGATCAGACGTTTCACACCGAAAACCGTA 17581541 Query 282701 TTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCT 282760 ||||| ||||| || || || || | | | || || || || || || || | | || Sbjct 17581542 TTGGTCGGATTCACAGCGGCCTGGTTTATTGCGGCTTCACCGATAAGGCGTCCCTTGTCA 17581601 Query 282761 GTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACT 282820 || || | |||| | || ||||||||||| || ||||| || || || || | || Sbjct 17581602 GTGAAGGCAACACAACTCGGGGTTGTGCGATTGCCCTGATCGTTGGCTATGATCTTCACC 17581661 Query 282821 TTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 || ||||| | ||||| |||||| || ||||| || || || || || |||||| Sbjct 17581662 CTATTTTTTTGGAAAACACCCACACAAGAGAAGGTTGTACCCAAGTCGATGCCGATAGCA 17581721 Score = 86.0 bits (94), Expect = 5e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 282337 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 282396 ||| ||||| || || | ||| |||||||| |||||||| || | | | |||||| || Sbjct 13302960 ATCCAGACCGTAAGCGAGAGCCGCAGCAGTAGGTTCATTGATGACACGAAGAACATTCAG 13302901 Query 282397 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 282456 || || || || |||||||| || || || | || ||||| || ||||| ||||| Sbjct 13302900 GCCGGCTATCTGACCAGCATCTTTGGTAGCCTGCCGCTGGGAATCATTGAAATAGGCAGG 13302841 Query 282457 AACAGTAATAACGGC 282471 |||||| ||||| || Sbjct 13302840 AACAGTGATAACCGC 13302826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740570650443042