Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1213 107 1e-18 >seq1213 Length=7437389 Score = 107 bits (118), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||| | ||| ||||| ||| || ||||||||||| ||||| || ||||| | Sbjct 1844789 ACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCC 1844730 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| ||||| || ||||| || || |||| |||||||||||| | || | || || || Sbjct 1844729 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1844670 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || ||| ||| |||| || | | ||| || | ||||| |||| |||| Sbjct 1844669 GTCCTGGATCTTCGCCTTC-ACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGA 1844611 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || | || || |||||||| |||||| Sbjct 1844610 TGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCATA 1844573 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || |||||||| ||||| Sbjct 1844573 ACCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGA 1844514 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| ||||| || ||||| || || |||| |||||||||||| | || Sbjct 1844513 AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGG 1844454 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || ||| |||| |||| || | | ||| || | |||| Sbjct 1844453 AATGCCCTCCTTGTCCTGGATCTTCGCTTTC-ACATTCTCAATCGAGTCACTCGGCTCCA 1844395 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || |||||||| |||||| Sbjct 1844394 CCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCATA 1844345 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || || ||||| ||||| Sbjct 1844345 ACCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGA 1844286 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| ||||| || ||||| || || |||| |||||||||||| | || Sbjct 1844285 AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGG 1844226 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || ||| ||| |||| || | | ||| || | |||| Sbjct 1844225 AATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTCTCAATCGAGTCACTCGGCTCCA 1844167 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | ||| || |||||||||||||| Sbjct 1844166 CCTCAAGTGTGATGGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || || | ||||| || ||||| ||| || || |||||||| ||||| Sbjct 1837869 ACCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 1837928 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| ||||| || ||||| || || |||| |||||||||||| | || Sbjct 1837929 AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGG 1837988 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || ||| ||| |||| || | | ||| || | |||| Sbjct 1837989 AATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTCTCAATCGAGTCACTCGGCTCCA 1838047 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || |||||||| |||||| Sbjct 1838048 CCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCATA 1838097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || |||||||| ||||| Sbjct 1838097 ACCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGA 1838156 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| |||| ||||| || ||||| || || |||| |||||||||||| | || Sbjct 1838157 AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGG 1838216 Query 33642 CACACCTTCTTTGTC 33656 | ||||||||||| Sbjct 1838217 AATGCCTTCTTTGTC 1838231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328699124600640