Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1213 105 2e-17 seq1207 84.2 5e-11 >seq1213 Length=7437389 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || ||||| ||||| || || |||||||| || || | |||| Sbjct 1838321 CAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGTGAC 1838262 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| || ||| ||||| ||||| |||||||| ||| ||||| || Sbjct 1838261 TCGATAGAAAACGTGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCAGCAG 1838202 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| ||||||||||||||||| || | || | |||| |||||| | Sbjct 1838201 CGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAACATT 1838142 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || |||||||| || Sbjct 1838141 CAGAAGGAGTCGACACTTCACCTGGT 1838116 >seq1207 Length=20116479 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || ||| | || || || |||||| | | || Sbjct 13120429 AAAACTCTTACTGGCAAAACTATAACTCTTGAGGTCGAGCCTTCTGATTCTATTGAGAAT 13120370 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||||||||| || || || ||| || || || | ||||| || Sbjct 13120369 GTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAGCAGCGTCTTATTTTT 13120310 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||||||||| ||||| || | || | || ||||| | ||||| ||||| Sbjct 13120309 GCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAATATTCAGAAGGAGTCA 13120250 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 13120249 ACCCTTCACCTTGT 13120236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181802372089857