Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1207 111 1e-19 >seq1207 Length=20116479 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| ||||||||| | ||| ||| ||| || | || ||||| | Sbjct 17430772 GACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCG 17430831 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || || || |||||||| ||||| || |||||||| |||||| ||||| Sbjct 17430832 AAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATCCTGAATTTTCGCTTTCACG 17430891 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | ||| | ||||| || || | || | ||||| ||||| ||||||||| Sbjct 17430892 TTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTT 17430951 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 17430952 ACGAAAATCTGCAT 17430965 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || ||||| |||||||| | || ||| ||| || | ||| || || | Sbjct 13120249 TTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCCTCCAACTGCTTGCCAG 13120308 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | || |||||||| |||||||| || || || || || || ||| || || | Sbjct 13120309 CAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTTAGCCTTTA 13120368 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || ||| | ||||| || || | || | ||||| ||||| ||||||| Sbjct 13120369 CATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTATAGTTTTGCCAGTAAGAGTTT 13120428 Query 132108 TTATGAAAATCTGCATG 132124 | | ||||||||||||| Sbjct 13120429 TCACGAAAATCTGCATG 13120445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476603949552120