Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1213 134 1e-26 >seq1213 Length=7437389 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| | ||| || |||| |||| |||||| ||||| || Sbjct 1837905 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAA 1837964 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| |||| |||| || |||||||||| |||||| ||||| | | Sbjct 1837965 TATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 1838024 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| |||| |||||||| | ||||| || || || || | || ||||| Sbjct 1838025 CTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCAC 1838084 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 1838085 AAAGATTTGCAT 1838096 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| | ||| || |||| |||| |||||| ||||| || Sbjct 1844537 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAA 1844478 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| |||| |||| || |||||||||| |||||| |||| | | Sbjct 1844477 TATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCTTTCACATT 1844418 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| |||| |||||||| | ||||| || || || || | || ||||| Sbjct 1844417 CTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCAC 1844358 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 1844357 AAAGATTTGCAT 1844346 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| | ||| || |||| |||| |||||| ||||| || Sbjct 1838133 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAA 1838192 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| |||||||| |||| |||| || || ||||| ||||| ||||| | Sbjct 1838193 TATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGTATCTTAGCCTTCACGTT 1838252 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || ||| || | || ||||||| || || || || || || | || ||||| Sbjct 1838253 TTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCAC 1838312 Query 35725 AAATATCTGCAT 35736 ||||||||||| Sbjct 1838313 GAATATCTGCAT 1838324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450786742302360