Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq1213 134 1e-26
>seq1213
Length=7437389
Score = 134 bits (148), Expect = 1e-26
Identities = 145/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| |||| | ||| || |||| |||| |||||| ||||| ||
Sbjct 1837905 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAA 1837964
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| |||||||| |||| |||| || |||||||||| |||||| ||||| | |
Sbjct 1837965 TATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 1838024
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || ||| |||| |||||||| | ||||| || || || || | || |||||
Sbjct 1838025 CTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCAC 1838084
Query 35725 AAATATCTGCAT 35736
||| || |||||
Sbjct 1838085 AAAGATTTGCAT 1838096
Score = 131 bits (144), Expect = 2e-25
Identities = 144/192 (75%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| |||| | ||| || |||| |||| |||||| ||||| ||
Sbjct 1844537 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAA 1844478
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| |||||||| |||| |||| || |||||||||| |||||| |||| | |
Sbjct 1844477 TATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCTTTCACATT 1844418
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | || ||| |||| |||||||| | ||||| || || || || | || |||||
Sbjct 1844417 CTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCAC 1844358
Query 35725 AAATATCTGCAT 35736
||| || |||||
Sbjct 1844357 AAAGATTTGCAT 1844346
Score = 113 bits (124), Expect = 4e-20
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| ||||||||||| |||| | ||| || |||| |||| |||||| ||||| ||
Sbjct 1838133 CTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAA 1838192
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| |||||||| |||| |||| || || ||||| ||||| ||||| |
Sbjct 1838193 TATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTGTATCTTAGCCTTCACGTT 1838252
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | || ||| || | || ||||||| || || || || || || | || |||||
Sbjct 1838253 TTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCAC 1838312
Query 35725 AAATATCTGCAT 35736
|||||||||||
Sbjct 1838313 GAATATCTGCAT 1838324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450786742302360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |