Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1207 217 2e-51 seq1209 215 7e-51 >seq1207 Length=20116479 Score = 217 bits (240), Expect = 2e-51 Identities = 428/628 (68%), Gaps = 4/628 (1%) Strand=Plus/Minus Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 || || | ||| || ||| ||| ||||| || |||||| ||| | | || || ||| Sbjct 7939341 TCGTACTTTGTGTAGAGCGTTTCAAATTCCTCCCCCCAAGAGTCAGCAAGACCGGGGCAT 7939282 Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615 || | || ||| || | ||| || | | | ||| || ||||| |||||||| Sbjct 7939281 TCGTGGGGGTCCATAAAGGTCCATGGGCCACCTGCTTCAACACGCTTCATGAATAGATCC 7939222 Query 69616 GGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttt 69675 ||||||||||| || | || ||||||| | | | ||| || || || || || Sbjct 7939221 GGAATCCAAAGTGCAAGGAAAAGATCTCGCGCACGAGCTTCCTCGGCACCAGTGTTCTTC 7939162 Query 69676 ttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACT 69735 | || | ||||| || | ||| | |||||| ||||| ||||| || || | | | Sbjct 7939161 CGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAAATGGCAAAGGCA 7939102 Query 69736 CCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGC 69795 || ||||| ||||| || |||||||| | || | ||||| | || |||| | ||| Sbjct 7939101 CCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTGAAGACCCGAAGC 7939042 Query 69796 ATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC-GCG 69854 ||||| | || ||| || || | ||||| || |||| || || | || ||| | || Sbjct 7939041 ATCGGCACAAGACCGTTGGACTCGCCATTGGTCCCAGCGATGAAAGTGCC-CTTACTCCG 7938983 Query 69855 AATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTT 69914 ||| | || | ||||| ||||| || || |||| ||||| || ||||| |||| Sbjct 7938982 GATACAATGAACATTGAGACCAATTCCACCAGCACTTTTTGAGATAAGTGCACATTGTTT 7938923 Query 69915 CAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGA 69974 | || |||||||| ||||| || || |||||| |||| |||| | ||| ||||| || Sbjct 7938922 GAGCGTATCATATATGCCCTCGATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTGGA 7938863 Query 69975 CATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTT 70034 ||| ||| | | || || |||||||| | || || || || ||| ||||| || Sbjct 7938862 CATCTGAGGGTTAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCATGAACCAACCACTT 7938803 Query 70035 TTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTA 70093 ||| || | |||||||| || |||||||| | || | |||| ||| ||| || || | Sbjct 7938802 TTCGGACATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCAC-CATGGATGCCGA 7938744 Query 70094 TCGCGACACGCATCAACATATGCTGAGG 70121 | | ||| ||||| ||||||| ||| || Sbjct 7938743 TAGAGACGCGCATAAACATATACTGGGG 7938716 >seq1209 Length=14622995 Score = 215 bits (238), Expect = 7e-51 Identities = 417/609 (68%), Gaps = 15/609 (2%) Strand=Plus/Minus Query 39601 ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTC 39660 ||||||||| || | ||| || || || || ||||| ||||| | || || || || Sbjct 7446619 ATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTC 7446560 Query 39661 GTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAA 39720 ||| || ||||| || ||||| ||||||||||| ||||||||||| || | |||||| Sbjct 7446559 GTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAA 7446500 Query 39721 AGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT 39780 || ||||||||||| | |||||| || || || ||||| || || | ||| |||| Sbjct 7446499 TGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGG 7446440 Query 39781 TG-TATC--ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCAT 39837 | | || ||| |||||| | | |||||||| |||||||| ||||| |||| Sbjct 7446439 GGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 7446380 Query 39838 TGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACT--ATCTTTAACATATGTATCT 39895 || | | || ||||| | | | | ||| |||| ||| |||| || ||||| Sbjct 7446379 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCA 7446322 Query 39896 ATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA 39955 || | ||| |||||||| ||||| |||||||| | || | || | ||||||||| Sbjct 7446321 ATCAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAA 7446262 Query 39956 CATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACT 40015 || | || || | |||||| || || |||||| | | | |||||||| || Sbjct 7446261 CAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAACG 7446202 Query 40016 ATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAAT---ATTTTTCATCG 40072 || |||||||| || |||||||| ||||| |||| || |||| || |||| Sbjct 7446201 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATC- 7446143 Query 40073 GGTGTCAATTTATT-CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 40131 | || || ||| ||| ||| || || | | ||| ||||| ||| ||||||| Sbjct 7446142 ---ATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCA 7446086 Query 40132 AAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 ||| || || | || || ||||| | | ||| || ||| ||||||| || || | | Sbjct 7446085 AAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCAC 7446026 Query 40192 AACAAATCT 40200 ||||||||| Sbjct 7446025 AACAAATCT 7446017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686898350399880