Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 217 2e-51
seq1209 215 7e-51
>seq1207
Length=20116479
Score = 217 bits (240), Expect = 2e-51
Identities = 428/628 (68%), Gaps = 4/628 (1%)
Strand=Plus/Minus
Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555
|| || | ||| || ||| ||| ||||| || |||||| ||| | | || || |||
Sbjct 7939341 TCGTACTTTGTGTAGAGCGTTTCAAATTCCTCCCCCCAAGAGTCAGCAAGACCGGGGCAT 7939282
Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615
|| | || ||| || | ||| || | | | ||| || ||||| ||||||||
Sbjct 7939281 TCGTGGGGGTCCATAAAGGTCCATGGGCCACCTGCTTCAACACGCTTCATGAATAGATCC 7939222
Query 69616 GGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttt 69675
||||||||||| || | || ||||||| | | | ||| || || || || ||
Sbjct 7939221 GGAATCCAAAGTGCAAGGAAAAGATCTCGCGCACGAGCTTCCTCGGCACCAGTGTTCTTC 7939162
Query 69676 ttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACT 69735
| || | ||||| || | ||| | |||||| ||||| ||||| || || | | |
Sbjct 7939161 CGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAAATGGCAAAGGCA 7939102
Query 69736 CCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGC 69795
|| ||||| ||||| || |||||||| | || | ||||| | || |||| | |||
Sbjct 7939101 CCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTGAAGACCCGAAGC 7939042
Query 69796 ATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC-GCG 69854
||||| | || ||| || || | ||||| || |||| || || | || ||| | ||
Sbjct 7939041 ATCGGCACAAGACCGTTGGACTCGCCATTGGTCCCAGCGATGAAAGTGCC-CTTACTCCG 7938983
Query 69855 AATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTT 69914
||| | || | ||||| ||||| || || |||| ||||| || ||||| ||||
Sbjct 7938982 GATACAATGAACATTGAGACCAATTCCACCAGCACTTTTTGAGATAAGTGCACATTGTTT 7938923
Query 69915 CAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGA 69974
| || |||||||| ||||| || || |||||| |||| |||| | ||| ||||| ||
Sbjct 7938922 GAGCGTATCATATATGCCCTCGATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTGGA 7938863
Query 69975 CATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTT 70034
||| ||| | | || || |||||||| | || || || || ||| ||||| ||
Sbjct 7938862 CATCTGAGGGTTAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCATGAACCAACCACTT 7938803
Query 70035 TTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTA 70093
||| || | |||||||| || |||||||| | || | |||| ||| ||| || || |
Sbjct 7938802 TTCGGACATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCAC-CATGGATGCCGA 7938744
Query 70094 TCGCGACACGCATCAACATATGCTGAGG 70121
| | ||| ||||| ||||||| ||| ||
Sbjct 7938743 TAGAGACGCGCATAAACATATACTGGGG 7938716
>seq1209
Length=14622995
Score = 215 bits (238), Expect = 7e-51
Identities = 417/609 (68%), Gaps = 15/609 (2%)
Strand=Plus/Minus
Query 39601 ATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTC 39660
||||||||| || | ||| || || || || ||||| ||||| | || || || ||
Sbjct 7446619 ATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTC 7446560
Query 39661 GTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAA 39720
||| || ||||| || ||||| ||||||||||| ||||||||||| || | ||||||
Sbjct 7446559 GTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAA 7446500
Query 39721 AGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT 39780
|| ||||||||||| | |||||| || || || ||||| || || | ||| ||||
Sbjct 7446499 TGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGG 7446440
Query 39781 TG-TATC--ATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCAT 39837
| | || ||| |||||| | | |||||||| |||||||| ||||| ||||
Sbjct 7446439 GGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAG 7446380
Query 39838 TGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACT--ATCTTTAACATATGTATCT 39895
|| | | || ||||| | | | | ||| |||| ||| |||| || |||||
Sbjct 7446379 CGTCTGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCA 7446322
Query 39896 ATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA 39955
|| | ||| |||||||| ||||| |||||||| | || | || | |||||||||
Sbjct 7446321 ATCAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAA 7446262
Query 39956 CATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACT 40015
|| | || || | |||||| || || |||||| | | | |||||||| ||
Sbjct 7446261 CAACGAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAACG 7446202
Query 40016 ATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAAT---ATTTTTCATCG 40072
|| |||||||| || |||||||| ||||| |||| || |||| || ||||
Sbjct 7446201 ATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATC- 7446143
Query 40073 GGTGTCAATTTATT-CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 40131
| || || ||| ||| ||| || || | | ||| ||||| ||| |||||||
Sbjct 7446142 ---ATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCA 7446086
Query 40132 AAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191
||| || || | || || ||||| | | ||| || ||| ||||||| || || | |
Sbjct 7446085 AAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCAC 7446026
Query 40192 AACAAATCT 40200
|||||||||
Sbjct 7446025 AACAAATCT 7446017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686898350399880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |