Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1209 214 1e-50 >seq1209 Length=14622995 Score = 214 bits (236), Expect = 1e-50 Identities = 412/596 (69%), Gaps = 19/596 (3%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| ||| | || || |||||||||||||| ||| | | ||||| ||||| Sbjct 7446017 AGATTTGTTGTGATGCCCATCCAATATCATGACATCTGGGAGTTTTACAAGAAAGCTGTT 7446076 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATT-GGATTGC 43815 || || |||||||||| || ||||| |||||| | || ||| | | ||| ||| || Sbjct 7446077 GCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGATTGGGAAGGC 7446136 Query 43816 ATTAA-AACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 |||| | | ||| ||||| ||||||| |||||||| |||||||| || || | Sbjct 7446137 CTTAATGATGGC--GAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCAGCCAGTG 7446194 Query 43875 ACGGGATAGTCAATGAAAA-TTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAA 43933 | || || || |||||||| | || | |||| | ||||| ||| | || || Sbjct 7446195 ATGGCATCGTTAATGAAAACCTAACTTTGAACTTTTG-TAACGAAGTCCAAATTCCCGAG 7446253 Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 || || |||||||| ||| | ||| | ||| | ||||| |||||||| ||||||||| | Sbjct 7446254 GCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAACATTCATTCCGAAATGTACTCT 7446313 Query 43994 CTTCTGATAGATACGTACATCAAAGAT----GGGCACGAGAAGCATCGATTGTTTAATGC 44049 |||||||| ||||| ||||| || ||| || ||| || | | |||||||| || Sbjct 7446314 CTTCTGATTGATACCTACATTAAGGATCCAGTGGAACGCGA--CTT--TTTGTTTAACGC 7446369 Query 44050 GATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AA 44105 | | || | || || | || | ||||| || ||||| |||| ||||| || Sbjct 7446370 CGTTCAGACGCTGCCATGTG-TTGCTAAGAAAGCCGATTGGGCTCTTAGGTGGATTGCAA 7446428 Query 44106 ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCT 44165 || || | | | | || || || || || || || | ||| |||||| |||||| Sbjct 7446429 ATAGGAAAGCCCCATACGCTGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCT 7446488 Query 44166 TTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGA 44225 |||| || || ||||| | || |||||| | ||||| || ||| | ||||| || | | Sbjct 7446489 TTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGCCTCA 7446548 Query 44226 CGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 | || || ||||| || || || ||||||||| | || ||||||||| ||| Sbjct 7446549 CCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATTTTGCATGC 7446604 Score = 82.4 bits (90), Expect = 6e-11 Identities = 107/147 (73%), Gaps = 12/147 (8%) Strand=Plus/Plus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 ||||| |||||||| ||||| ||||| || | ||||| || || ||||||||||| || Sbjct 7446882 AACCCTTTTGATTTCATGGAGAATATCTCTCTAGAAGGGAAGACCAACTTTTTTGAGAAG 7446941 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG------ATAACAAGT---GACA---AT 44602 || || | ||| ||||| || ||||||||| || | | || |||| | Sbjct 7446942 CGTGTCGCAGAGTATCAACGTGCTGGCGTCATGTCGCGCATGAGAGGTGAAGACACTCAC 7447001 Query 44603 AAATTTACTACGGATGAAGATTTCTAA 44629 || |||||||| ||||| ||||||||| Sbjct 7447002 AAGTTTACTACTGATGAGGATTTCTAA 7447028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397450104858085