Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 214 1e-50
>seq1209
Length=14622995
Score = 214 bits (236), Expect = 1e-50
Identities = 412/596 (69%), Gaps = 19/596 (3%)
Strand=Plus/Plus
Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756
|| ||||| ||| | || || |||||||||||||| ||| | | ||||| |||||
Sbjct 7446017 AGATTTGTTGTGATGCCCATCCAATATCATGACATCTGGGAGTTTTACAAGAAAGCTGTT 7446076
Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATT-GGATTGC 43815
|| || |||||||||| || ||||| |||||| | || ||| | | ||| ||| ||
Sbjct 7446077 GCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCGAAGGACCTCACTGATTGGGAAGGC 7446136
Query 43816 ATTAA-AACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874
|||| | | ||| ||||| ||||||| |||||||| |||||||| || || |
Sbjct 7446137 CTTAATGATGGC--GAACGTCATTTCATATCTTATGTTTTGGCTTTTTTTGCAGCCAGTG 7446194
Query 43875 ACGGGATAGTCAATGAAAA-TTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAA 43933
| || || || |||||||| | || | |||| | ||||| ||| | || ||
Sbjct 7446195 ATGGCATCGTTAATGAAAACCTAACTTTGAACTTTTG-TAACGAAGTCCAAATTCCCGAG 7446253
Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993
|| || |||||||| ||| | ||| | ||| | ||||| |||||||| ||||||||| |
Sbjct 7446254 GCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAACATTCATTCCGAAATGTACTCT 7446313
Query 43994 CTTCTGATAGATACGTACATCAAAGAT----GGGCACGAGAAGCATCGATTGTTTAATGC 44049
|||||||| ||||| ||||| || ||| || ||| || | | |||||||| ||
Sbjct 7446314 CTTCTGATTGATACCTACATTAAGGATCCAGTGGAACGCGA--CTT--TTTGTTTAACGC 7446369
Query 44050 GATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AA 44105
| | || | || || | || | ||||| || ||||| |||| ||||| ||
Sbjct 7446370 CGTTCAGACGCTGCCATGTG-TTGCTAAGAAAGCCGATTGGGCTCTTAGGTGGATTGCAA 7446428
Query 44106 ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCT 44165
|| || | | | | || || || || || || || | ||| |||||| ||||||
Sbjct 7446429 ATAGGAAAGCCCCATACGCTGAGCGGCTAGTGGCATTCGCTGCTGTTGAAGGCGTTTTCT 7446488
Query 44166 TTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGA 44225
|||| || || ||||| | || |||||| | ||||| || ||| | ||||| || | |
Sbjct 7446489 TTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGCCTCA 7446548
Query 44226 CGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281
| || || ||||| || || || ||||||||| | || ||||||||| |||
Sbjct 7446549 CCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATTTTGCATGC 7446604
Score = 82.4 bits (90), Expect = 6e-11
Identities = 107/147 (73%), Gaps = 12/147 (8%)
Strand=Plus/Plus
Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554
||||| |||||||| ||||| ||||| || | ||||| || || ||||||||||| ||
Sbjct 7446882 AACCCTTTTGATTTCATGGAGAATATCTCTCTAGAAGGGAAGACCAACTTTTTTGAGAAG 7446941
Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG------ATAACAAGT---GACA---AT 44602
|| || | ||| ||||| || ||||||||| || | | || |||| |
Sbjct 7446942 CGTGTCGCAGAGTATCAACGTGCTGGCGTCATGTCGCGCATGAGAGGTGAAGACACTCAC 7447001
Query 44603 AAATTTACTACGGATGAAGATTTCTAA 44629
|| |||||||| ||||| |||||||||
Sbjct 7447002 AAGTTTACTACTGATGAGGATTTCTAA 7447028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397450104858085
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |