Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1213 96.9 3e-15 seq1207 95.1 1e-14 >seq1213 Length=7437389 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||||||| | | |||| ||||||| | ||| || || Sbjct 1844542 GTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCC 1844483 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| |||||||| || | ||||| || || |||||| |||| Sbjct 1844482 GCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCTTTC 1844423 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | | ||| | | || || || || || || | ||||| || || || Sbjct 1844422 ACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTC 1844363 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||||||||||||| Sbjct 1844362 TTCACAAAGATTTGCATA 1844345 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||||||| | | |||| ||||||| | ||| || || Sbjct 1837900 GTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCC 1837959 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| |||||||| || | ||||| || || |||||| ||| Sbjct 1837960 GCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 1838019 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | | ||| | | || || || || || || | ||||| || || || Sbjct 1838020 ACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTC 1838079 Query 27231 TTCACAAAGATTTGCATA 27248 |||||||||||||||||| Sbjct 1838080 TTCACAAAGATTTGCATA 1838097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | |||| || | ||| | || || || || || || ||||||||| Sbjct 1844800 CCGCCGCGGAGACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAA 1844741 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| ||||||| | ||| || || ||| | || |||||||| |||||||| || Sbjct 1844740 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844681 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| |||| | || | | ||| | | || || Sbjct 1844680 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACC 1844621 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | ||||| || || || |||||||||||||||||| Sbjct 1844620 TCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCATA 1844573 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||||||||||||| | | |||| ||||||| | ||| || || Sbjct 1844314 GTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCC 1844255 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| |||||||| || | ||||| || || |||||| ||| Sbjct 1844254 GCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 1844195 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | | ||| | | || || || || || || | ||||| || || || Sbjct 1844194 ACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGCGTC 1844135 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 1844134 TTCACAAAGATCTGCAT 1844118 >seq1207 Length=20116479 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || |||||||||||||||||| | | | ||| | || || | || ||||| Sbjct 17430769 GTCGACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCA 17430828 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || || || ||||| ||||| | |||||||||||| || || |||| Sbjct 17430829 GCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATCCTGAATTTTCGCTTTC 17430888 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | | || | | ||||| || || ||||||| ||| || || |||||| Sbjct 17430889 ACGTTCTCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGAGTT 17430948 Query 27231 TTCACAAAGATTTGCAT 27247 || || || || ||||| Sbjct 17430949 TTTACGAAAATCTGCAT 17430965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424928097293304