Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1207 149 8e-31 >seq1207 Length=20116479 Score = 149 bits (164), Expect = 8e-31 Identities = 414/629 (66%), Gaps = 7/629 (1%) Strand=Plus/Minus Query 111460 CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC 111519 |||||||||||||||||| | |||||| ||||| ||| | ||| | ||||| || || Sbjct 7939342 CTCGTACTTTGTGTAGAGCGTTTCAAATTCCTCCCCCCAAGAGTCAGCAAGACCGGG-GC 7939284 Query 111520 CTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGT 111578 || || || | || | |||| | |||||| | ||||| ||||||||||| || | Sbjct 7939283 ATTCGTGGGGGTCCATAAAGGTCCATGGGCCACCTGCTTCAACACGCTTCATGAATAGAT 7939224 Query 111579 CTGGAATCCACAG-GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTG 111637 | |||||||| || | | | ||| ||||||| ||||| || ||| |||| ||| Sbjct 7939223 CCGGAATCCAAAGTGCAAGGAAA-AGATCTCGCGCACGAGCTTCCTCGGCACCAGTGTTC 7939165 Query 111638 AGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATA 111697 ||||| || | |||| || | ||||| ||||| || || ||||| | || | Sbjct 7939164 TTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAAATGGCAAAG 7939105 Query 111698 GATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 111754 | || ||| | || | |||| ||||| || || || ||| || || ||| Sbjct 7939104 GCACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTGAAGACCCGA 7939045 Query 111755 AGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCT 111814 ||||| || | || ||| | || | ||||| ||||| || || || Sbjct 7939044 AGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCCCAGCGATGAAAGTGCCCTTACTC 7938985 Query 111815 CTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 111874 | | | ||| | | | ||||| || ||||| | |||||||| | ||||| | Sbjct 7938984 CGGATACAATGAACATTGAGACCAATTCCACCAGCACTTTTTGAGATAAGTGCACATTGT 7938925 Query 111875 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 111934 | || || |||| || || | ||| ||| || || | | | | ||||| ||| Sbjct 7938924 TTGAGCGTATCATATATGCCCTCGATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTG 7938865 Query 111935 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 111994 |||||||| || | || || |||||||| || || || |||| || |||| ||| Sbjct 7938864 GACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCATGAACCAACCAC 7938805 Query 111995 CCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCG 112054 || |||||| | ||| ||||| | ||| ||||| || || || ||||||||| Sbjct 7938804 TTTTCGGACATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCACCATGGATGCCG 7938745 Query 112055 ATTGCGACCCGCATGAACATGTACTGTGG 112083 || | ||| ||||| ||||| ||||| || Sbjct 7938744 ATAGAGACGCGCATAAACATATACTGGGG 7938716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628022446063200