Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1207 132 6e-26 seq1209 116 4e-21 >seq1207 Length=20116479 Score = 132 bits (146), Expect = 6e-26 Identities = 419/641 (65%), Gaps = 9/641 (1%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||||| ||||| |||||||| | ||||| || ||||| || || ||||| ||| Sbjct 7938716 CCCCAGTATATGTTTATGCGCGTCTCTATCGGCATCCATGGTGAGGATCTTGATGCTGCT 7938775 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| | |||||| || ||| |||| || |||| || || || Sbjct 7938776 ATTGAGACGTACAATCTCATGTCCGAAAAGTGGTTGGTTCATGCTTCACCCACTCTTTTT 7938835 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 |||||||| || || | || || |||||||| ||||| | | | | || || ||| Sbjct 7938836 AATGCTGGGACGCCTAACCCTCAGATGTCCAGCTGCTTTTTGCTTACGATGAAAGATGAC 7938895 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 ||| | || || |||| || || | | ||||| | |||||||| | ||||| Sbjct 7938896 AGTATCGAGGGCATATATGATACGCTCAAACAATGTGCACTTATCTCAAAAAGTGCTGGT 7938955 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521 || ||||| | | | ||| | | | || || || ||||| ||| Sbjct 7938956 GGAATTGGTCTCAATGTTCATTGTATCCGGAGTAAGGGCACTTTCATCGCTGGGACCAAT 7939015 Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581 || | || | ||| || | || |||||||| || || ||| || || || ||||| Sbjct 7939016 GGCGAGTCCAACGGTCTTGTGCCGATGCTTCGGGTCTTCAACAGTACTGCTCGGTATGTT 7939075 Query 104582 AATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 104638 |||| | || | ||| || | | || | ||||| || || ||||| || Sbjct 7939076 GATCAGGGGGGCAATAAGCGACCCGGTGCCTTTGCCATTTATCTCGAACCGTGGCATCCG 7939135 Query 104639 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CG 104697 ||| | || |||| | || || || ||| |||| |||||| || || ||| || Sbjct 7939136 GATGTGCTGCAGTTTGTGGAATTACGGAAGAACACTGGTGCCGAGGAAGCTCG-TGCGCG 7939194 Query 104698 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 104757 ||||| ||| || || |||||||| ||||| ||||||||| | ||||| | |||| Sbjct 7939195 AGATCTTTTCCTTGCACTTTGGATTCCGGATCTATTCATGAAGCGTGTTGAAGCAGGTGG 7939254 Query 104758 CAATTGGTCTCTCTTTTGTCCAG-AC-AAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815 | ||| | || | | | || || || || || ||||| | || | ||| ||| Sbjct 7939255 CCCATGGAC-CTTTATGGACCCCCACGAATGCCCC-GGTCTTGCTGACTCTTGGGGGGAG 7939312 Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG 104856 || |||||| | || ||||||||||||||| ||||||||| Sbjct 7939313 GAATTTGAAACGCTCTACACAAAGTACGAGTTAGAAGGTCG 7939353 >seq1209 Length=14622995 Score = 116 bits (128), Expect = 4e-21 Identities = 175/244 (72%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 94717 TTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 94776 ||| | ||| | || || | || ||| || |||||||| ||||||||| | | |||| Sbjct 7446362 TTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGG 7446421 Query 94777 TTTG---ATAC-AAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| ||| |||| | | | | |||||||| || | ||||| || |||||| Sbjct 7446422 ATTGCAAATAGGAAAGCCCCATAC----GCTGAGCGGCTAGTGGCATTCGCTGCTGTTGA 7446477 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCA 94891 || | ||||| |||||||| || ||| |||| | ||||||||||||||| ||||||| Sbjct 7446478 AGGCGTTTTCTTTTCTGGTTCATT-TGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCA 7446536 Query 94892 TGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGT 94951 ||||||| ||| |||| ||||||| | ||| || || || || |||||| || | Sbjct 7446537 TGCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATT 7446596 Query 94952 TTGC 94955 |||| Sbjct 7446597 TTGC 7446600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583251927145080