Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 132 6e-26
seq1209 116 4e-21
>seq1207
Length=20116479
Score = 132 bits (146), Expect = 6e-26
Identities = 419/641 (65%), Gaps = 9/641 (1%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||||| ||||| |||||||| | ||||| || ||||| || || ||||| |||
Sbjct 7938716 CCCCAGTATATGTTTATGCGCGTCTCTATCGGCATCCATGGTGAGGATCTTGATGCTGCT 7938775
Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341
| ||||| ||| | |||||| || ||| |||| || |||| || || ||
Sbjct 7938776 ATTGAGACGTACAATCTCATGTCCGAAAAGTGGTTGGTTCATGCTTCACCCACTCTTTTT 7938835
Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401
|||||||| || || | || || |||||||| ||||| | | | | || || |||
Sbjct 7938836 AATGCTGGGACGCCTAACCCTCAGATGTCCAGCTGCTTTTTGCTTACGATGAAAGATGAC 7938895
Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461
||| | || || |||| || || | | ||||| | |||||||| | |||||
Sbjct 7938896 AGTATCGAGGGCATATATGATACGCTCAAACAATGTGCACTTATCTCAAAAAGTGCTGGT 7938955
Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 104521
|| ||||| | | | ||| | | | || || || ||||| |||
Sbjct 7938956 GGAATTGGTCTCAATGTTCATTGTATCCGGAGTAAGGGCACTTTCATCGCTGGGACCAAT 7939015
Query 104522 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 104581
|| | || | ||| || | || |||||||| || || ||| || || || |||||
Sbjct 7939016 GGCGAGTCCAACGGTCTTGTGCCGATGCTTCGGGTCTTCAACAGTACTGCTCGGTATGTT 7939075
Query 104582 AATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 104638
|||| | || | ||| || | | || | ||||| || || ||||| ||
Sbjct 7939076 GATCAGGGGGGCAATAAGCGACCCGGTGCCTTTGCCATTTATCTCGAACCGTGGCATCCG 7939135
Query 104639 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC-CG 104697
||| | || |||| | || || || ||| |||| |||||| || || ||| ||
Sbjct 7939136 GATGTGCTGCAGTTTGTGGAATTACGGAAGAACACTGGTGCCGAGGAAGCTCG-TGCGCG 7939194
Query 104698 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 104757
||||| ||| || || |||||||| ||||| ||||||||| | ||||| | ||||
Sbjct 7939195 AGATCTTTTCCTTGCACTTTGGATTCCGGATCTATTCATGAAGCGTGTTGAAGCAGGTGG 7939254
Query 104758 CAATTGGTCTCTCTTTTGTCCAG-AC-AAGGCACCTGGTCTCTCCGATGCCGTGGGTGAG 104815
| ||| | || | | | || || || || || ||||| | || | ||| |||
Sbjct 7939255 CCCATGGAC-CTTTATGGACCCCCACGAATGCCCC-GGTCTTGCTGACTCTTGGGGGGAG 7939312
Query 104816 GAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG 104856
|| |||||| | || ||||||||||||||| |||||||||
Sbjct 7939313 GAATTTGAAACGCTCTACACAAAGTACGAGTTAGAAGGTCG 7939353
>seq1209
Length=14622995
Score = 116 bits (128), Expect = 4e-21
Identities = 175/244 (72%), Gaps = 10/244 (4%)
Strand=Plus/Plus
Query 94717 TTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGG 94776
||| | ||| | || || | || ||| || |||||||| ||||||||| | | ||||
Sbjct 7446362 TTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGCTCTTAGGTGG 7446421
Query 94777 TTTG---ATAC-AAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832
||| ||| |||| | | | | |||||||| || | ||||| || ||||||
Sbjct 7446422 ATTGCAAATAGGAAAGCCCCATAC----GCTGAGCGGCTAGTGGCATTCGCTGCTGTTGA 7446477
Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCA 94891
|| | ||||| |||||||| || ||| |||| | ||||||||||||||| |||||||
Sbjct 7446478 AGGCGTTTTCTTTTCTGGTTCATT-TGCTTCTATCTTTTGGCTCAAGAAGCGTGGTCTCA 7446536
Query 94892 TGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGT 94951
||||||| ||| |||| ||||||| | ||| || || || || |||||| || |
Sbjct 7446537 TGCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACACCGATT 7446596
Query 94952 TTGC 94955
||||
Sbjct 7446597 TTGC 7446600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583251927145080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |