Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1207 141 1e-28 >seq1207 Length=20116479 Score = 141 bits (156), Expect = 1e-28 Identities = 389/590 (66%), Gaps = 12/590 (2%) Strand=Plus/Plus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACC----T 19152 |||| ||| ||||| | || ||||| ||| | ||||||||||||| || || | | Sbjct 7938710 GAGAGGCCCCAGTATATGTTTATGCGCGTCTCTATCGGCATCCATGGTGAGGATCTTGAT 7938769 Query 19153 CCCGCGAGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCC 19212 | || | | ||||| ||| | || ||| | | |||| || || || | || Sbjct 7938770 GCTGCTATT----GAGACGTACAATCTCATGTCCGAAAAGTGGTTGGTTCATGCTTCACC 7938825 Query 19213 GACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTAT 19272 || ||||| || || || ||| ||||| |||||||| ||||| || | | | || Sbjct 7938826 CACTCTTTTTAATGCTGGGACGCCTAACCCTCAGATGTCCAGCTGCTTTTTGCTTACGAT 7938885 Query 19273 GAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAA 19332 ||| |||||||| || |||||||| || || |||||||| | || || | ||||| || Sbjct 7938886 GAAAGATGACAGTATCGAGGGCATATATGATACGCTCAAACAATGTGCACTTATCTCAAA 7938945 Query 19333 GTGGTCCGGGGGTATCGGGATCCACTGCTC-GAATATCCGGTCGAGTGGTACACGAATCA 19391 | | || || || || | || || || ||||||| | || || ||| Sbjct 7938946 AAGTGCTGGTGGAATTGGTCT-CAATGTTCATTGTATCCGGAGTAAGGGCACTTTCATCG 7939004 Query 19392 ATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGG 19451 |||||| || || | || ||||| | || || ||||| || |||||||||| || | Sbjct 7939005 CTGGGACCAATGGCGAGTCCAACGGTCTTGTGCCGATGCTTCGGGTCTTCAACAGTACTG 7939064 Query 19452 CCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGC 19511 | |||| || | ||||||||| || || || | || ||||| || ||||| | Sbjct 7939065 CTCGGTATGTTGATCAGGGGGGCAATAAGCGACCCGGTGCCTTTGCCATTTATCTCGAAC 7939124 Query 19512 CATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGA 19571 | ||||| |||| || || | || | ||| | || |||| |||| |||||| Sbjct 7939125 CGTGGCATCCGGATGTGCTGCAGTTTGTGGAATTACGGAAGAACACTGGTGCCGAGGAAG 7939184 Query 19572 TGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTG 19631 || || || || ||| || | ||||||||||| ||||||||| || |||| Sbjct 7939185 CTCGTGCGCGAGATCTTTTCCTTGCACTTTGGATTCCGGATCTATTCATGAAGCGTGTTG 7939244 Query 19632 -AGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCT 19680 || ||| | |||| | | ||| ||| ||||||||||| || || Sbjct 7939245 AAGCAGG-TGGCCCATGGACCTTTATGGACCCCCACGAATGCCCCGGTCT 7939293 Score = 140 bits (154), Expect = 4e-28 Identities = 386/587 (66%), Gaps = 6/587 (1%) Strand=Plus/Minus Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCA--GTCCTCGTCCTTCTCAACCTTCT 79381 || || ||||| ||||| ||| ||| | | ||| | || | | |||| ||| || Sbjct 7939293 AGACCGGGGCATTCGTGGGGGTCCATAAAGGTCCATGGGCCACCTGCTTC--AACACGCT 7939236 Query 79382 CCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGT 79441 |||||| || ||||| ||||| || || ||| || || || ||| |||||| Sbjct 7939235 TCATGAATAGATCCGGAATCCAAAGTGCAAGGAAAAGATCTCGCGCACGAGCTTCCTCGG 7939176 Query 79442 CGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGAT 79501 | || |||| || | || | ||| | || | || | |||||||| || |||| Sbjct 7939175 CACCAGTGTTCTTCCGTAATTCCACAAACTGCAGCACATCCGGATGCCACGGTTCGAGAT 7939116 Query 79502 AGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGT 79561 | ||||| || | ||| ||||| ||| ||||| | || ||||| || || ||| Sbjct 7939115 AAATGGCAAAGGCACCGGGTCGCTTATTGCCCCCCTGATCAACATACCGAGCAGTACTGT 7939056 Query 79562 TGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTG 79621 |||| || || ||||| ||||| | |||| || |||| || ||||| ||| | Sbjct 7939055 TGAAGACCCGAAGCATCGGCACAAGACCGTTGGACTCGCCATTGGTCCCAGCGATGAAAG 7938996 Query 79622 TACCGCTCGCCCGAATGTTC-GAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATG 79680 | || | ||| || || || || | || || || || | | || ||||| Sbjct 7938995 TGCCCTTACTCCGGATACAATGAACATTG-AGACCAATTCCACCAGCACTTTTTGAGATA 7938937 Query 79681 TGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACC 79740 | || || | |||||||| || || ||||||||||| ||| || ||||| | | | Sbjct 7938936 AGTGCACATTGTTTGAGCGTATCATATATGCCCTCGATACTGTCATCTTTCATCGTAAGC 7938877 Query 79741 AGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCG 79800 | |||||||| |||||||| ||||| ||| || || || || || || || | || Sbjct 7938876 AAAAAGCAGCTGGACATCTGAGGGTTAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCA 7938817 Query 79801 TGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCG 79860 || || |||||| | ||| |||| ||||||||| | | || || || Sbjct 7938816 TGAACCAACCACTTTTCGGACATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCA 7938757 Query 79861 CCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTC 79907 || |||||||||| | ||||||||| || | ||||||||| |||| Sbjct 7938756 CCATGGATGCCGATAGAGACGCGCATAAACATATACTGGGGCCTCTC 7938710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548516455566480