Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 156 5e-33
>seq1207
Length=20116479
Score = 156 bits (172), Expect = 5e-33
Identities = 395/590 (67%), Gaps = 12/590 (2%)
Strand=Plus/Plus
Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGA-CTACAC 53232
|||| ||| |||||| | || ||||||||| | | || ||||| ||||| || || |
Sbjct 7938710 GAGAGGCCCCAGTATATGTTTATGCGCGTCTCTATCGGCATCCATGGTGAGGATCTTGAT 7938769
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292
|| || |||||||||| | | ||| | |||||| || || || | || ||
Sbjct 7938770 GC-TGCTATTGAGACGTACAATCTCATGTCCGAAAAGTGGTTGGTTCATGCTTCACCCAC 7938828
Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352
|| || || ||||| ||| | ||||||||||||| |||||||| || | |||||||
Sbjct 7938829 TCTTTTTAATGCTGGGACGCCTAACCCTCAGATGTCCAGCTGCTTTTTGCTTACGATGAA 7938888
Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412
|||||| ||||| ||||| || || |||||||| | ||||| | ||||| || |
Sbjct 7938889 AGATGACAGTATCGAGGGCATATATGATACGCTCAAACAATGTGCACTTATCTCAAAAAG 7938948
Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAG 53470
| ||||| || ||| | || || || | | |||| || ||||| |||
Sbjct 7938949 TGCTGGTGGAATTGGTCT-CAATGTTC-ATTGTATCCGGAGTAAGGGCACTTTCATCGCT 7939006
Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530
||||| || |||| || | || | ||||| ||||| || |||||||||| || ||
Sbjct 7939007 GGGACCAATGGCGAGTCCAACGGTCTTGTGCCGATGCTTCGGGTCTTCAACAGTACTGCT 7939066
Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590
||||| || | ||||| || ||||| || | || ||||| || ||||| |||
Sbjct 7939067 CGGTATGTTGATCAGGGGGGCAATAAGCGACCCGGTGCCTTTGCCATTTATCTCGAACCG 7939126
Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650
||||| | || | || ||||| | || | || ||| |||| ||| ||
Sbjct 7939127 TGGCATCCGGATGTGCTGCAGTTTGTGGAATTACGGAAGAACACTGGTGCCGAGGAAGCT 7939186
Query 53651 CGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709
|| ||| || || || || || || ||||||||||| || |||||| || |||
Sbjct 7939187 CG-TGCGCGAGATCTTTTCCTTGCACTTTGGATTCCGGATCTATTCATG--AAGCGTGTT 7939243
Query 53710 GAAGGACGAGG--AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757
|||| | | || ||| | | ||| ||| |||| |||||||| ||
Sbjct 7939244 GAAGCAGGTGGCCCATGGACCTTTATGGACCCCCACGAATGCCCCGGTCT 7939293
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547207675476600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |