Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1207 156 5e-33 >seq1207 Length=20116479 Score = 156 bits (172), Expect = 5e-33 Identities = 395/590 (67%), Gaps = 12/590 (2%) Strand=Plus/Plus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGA-CTACAC 53232 |||| ||| |||||| | || ||||||||| | | || ||||| ||||| || || | Sbjct 7938710 GAGAGGCCCCAGTATATGTTTATGCGCGTCTCTATCGGCATCCATGGTGAGGATCTTGAT 7938769 Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 || || |||||||||| | | ||| | |||||| || || || | || || Sbjct 7938770 GC-TGCTATTGAGACGTACAATCTCATGTCCGAAAAGTGGTTGGTTCATGCTTCACCCAC 7938828 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 || || || ||||| ||| | ||||||||||||| |||||||| || | ||||||| Sbjct 7938829 TCTTTTTAATGCTGGGACGCCTAACCCTCAGATGTCCAGCTGCTTTTTGCTTACGATGAA 7938888 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 |||||| ||||| ||||| || || |||||||| | ||||| | ||||| || | Sbjct 7938889 AGATGACAGTATCGAGGGCATATATGATACGCTCAAACAATGTGCACTTATCTCAAAAAG 7938948 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAG 53470 | ||||| || ||| | || || || | | |||| || ||||| ||| Sbjct 7938949 TGCTGGTGGAATTGGTCT-CAATGTTC-ATTGTATCCGGAGTAAGGGCACTTTCATCGCT 7939006 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 ||||| || |||| || | || | ||||| ||||| || |||||||||| || || Sbjct 7939007 GGGACCAATGGCGAGTCCAACGGTCTTGTGCCGATGCTTCGGGTCTTCAACAGTACTGCT 7939066 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 ||||| || | ||||| || ||||| || | || ||||| || ||||| ||| Sbjct 7939067 CGGTATGTTGATCAGGGGGGCAATAAGCGACCCGGTGCCTTTGCCATTTATCTCGAACCG 7939126 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||| | || | || ||||| | || | || ||| |||| ||| || Sbjct 7939127 TGGCATCCGGATGTGCTGCAGTTTGTGGAATTACGGAAGAACACTGGTGCCGAGGAAGCT 7939186 Query 53651 CGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 || ||| || || || || || || ||||||||||| || |||||| || ||| Sbjct 7939187 CG-TGCGCGAGATCTTTTCCTTGCACTTTGGATTCCGGATCTATTCATG--AAGCGTGTT 7939243 Query 53710 GAAGGACGAGG--AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT 53757 |||| | | || ||| | | ||| ||| |||| |||||||| || Sbjct 7939244 GAAGCAGGTGGCCCATGGACCTTTATGGACCCCCACGAATGCCCCGGTCT 7939293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207675476600