Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1207 179 4e-40 seq1213 170 2e-37 seq1211 105 8e-18 seq1209 89.7 6e-13 >seq1207 Length=20116479 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || ||||| ||||| ||||| ||||||||||| ||| | | Sbjct 13120444 ATGCAGATTTTCGTGAAAACTCTTACTGGCAAAACTATAACTCTTGAGGTCGAGCCTTCT 13120385 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 ||| |||| ||| | |||||||| ||||| ||||||||||| ||||| ||||| ||| Sbjct 13120384 GATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAG 13120325 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| | ||||||| || || || | ||||| ||| Sbjct 13120324 CAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAAT 13120265 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || || | |||||||| ||||| Sbjct 13120264 ATTCAGAAGGAGTCAACCCTTCACCTTGTGCTTCGTCTTCGTGGTGG 13120218 Score = 163 bits (180), Expect = 3e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || || ||||| || || ||||| || |||||||||||| || | Sbjct 17430966 AATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAG 17430907 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || |||| || ||||||||||| || ||||| || || ||||| || Sbjct 17430906 TGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGCCAGATCA 17430847 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| || || || || |||||||||||| | ||||||| || |||||| | ||||| || Sbjct 17430846 GCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAA 17430787 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | | |||||||| || || ||||| || || Sbjct 17430786 TATTCAAAAGGAGTCGACACTTCACCTTGT 17430757 >seq1213 Length=7437389 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||||||||| |||||||| || || |||||||| ||| | || Sbjct 1844118 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844177 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| ||||||| || || |||||||||||||| ||||| || || ||| Sbjct 1844178 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844237 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| | || || | || ||||| | ||||| ||| Sbjct 1844238 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAT 1844297 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || || | |||||||| ||||| Sbjct 1844298 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGG 1844344 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| ||||| |||||||| || || |||||||| ||| | || Sbjct 1844574 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844633 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| ||||||| || || |||||||||||||| ||||| || || ||| Sbjct 1844634 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844693 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| | || || | || ||||| | ||||| || Sbjct 1844694 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844753 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| ||||| || ||||||| ||||| || Sbjct 1844754 ATACAGAAGGAGTCGACTCTGCATCTTGTGCTGCGTCTCCGCGGCGG 1844800 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| ||||| |||||||| || || |||||||| ||| | || Sbjct 1844346 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844405 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| |||| || || || |||||||||||||| ||||| || || ||| Sbjct 1844406 GACTCGATTGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844465 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| | || || | || ||||| | ||||| || Sbjct 1844466 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844525 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || || | |||||||| ||||| Sbjct 1844526 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGG 1844572 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| ||||| |||||||| || || |||||||| ||| | || Sbjct 1838096 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1838037 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| ||||||| || || |||||||||||||| ||||| || || ||| Sbjct 1838036 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1837977 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| | || || | || ||||| | ||||| || Sbjct 1837976 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1837917 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || |||||||| || || | || || || || || Sbjct 1837916 ATTCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGCGG 1837870 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || |||||||||||| | ||||||||| | || Sbjct 1838324 ATGCAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGT 1838265 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | ||| |||||||||| || || ||||| || || ||||| || || ||| Sbjct 1838264 GACTCGATAGAAAACGTGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCAG 1838205 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| | || || | || ||||| | ||||| || Sbjct 1838204 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1838145 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || || | |||||||| ||||| Sbjct 1838144 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGG 1838098 >seq1211 Length=11859842 Score = 105 bits (116), Expect = 8e-18 Identities = 237/356 (67%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 32047 GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGC 32106 || || |||||||| ||| ||| || ||| |||||| | |||| ||||||||| Sbjct 3458974 GAGATTAAGGTGGCTCAGTTGTGCGGTGCCGTTGCAGAGATGTCCTCCTACCACCACGGC 3458915 Query 32107 GAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAAC 32166 |||| ||| ||| |||||| || || || || ||| ||||||| ||| | || ||| Sbjct 3458914 GAGGTGTCTCTCATGGGCACTATCATCGGTCTAGCCCAGGACTTTGTAGGTTCCAACAAC 3458855 Query 32167 CTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCT 32226 || || | || ||| | ||| ||||| || || || ||| |||| ||||| || | Sbjct 3458854 CTCAATCTGCTGATGCCCTATGGTCAGTTCGGTACGCGTCTCTCCGGCGGCAAAGACTCC 3458795 Query 32227 GCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCG 32286 || ||||||| ||||||||| |||| ||| || |||||||| || || | Sbjct 3458794 GCTTCTGCCCGTTATATCTTCACCGCTCTCAGTCCTCTAACTCGCAAGATCTTTCACGAG 3458735 Query 32287 TCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTC 32346 |||||| | | | || ||| ||||| || |||| | | ||||| | || Sbjct 3458734 AACGACGATCCCATTTTAAACTACTTATTTGAGGATAATCAGAAGATTGAGCCCGCGTGG 3458675 Query 32347 TACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 || | || || | || ||| || | | ||||| || || || || || || || Sbjct 3458674 TATATGCCAGTCATCCCTATGGTCCTCATCAACGGAGCCGAGGGTATTGGCACAGG 3458619 >seq1209 Length=14622995 Score = 89.7 bits (98), Expect = 6e-13 Identities = 351/549 (64%), Gaps = 5/549 (1%) Strand=Plus/Plus Query 64321 TGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCGCC 64380 |||||| ||||||||||||| | || || ||||| || ||||| || ||| | || Sbjct 7446053 TGGGAGTTTTACAAGAAAGCTGTTGCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCG 7446112 Query 64381 AAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTGGT 64439 ||||| |||| || |||||| ||| || | | | |||| || ||||| | || Sbjct 7446113 AAGGACCTCACTGATTGGGAAGGCCTTAA-TGATGGCGAACGTCATTTCATATCTTATGT 7446171 Query 64440 CCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTTAC 64499 | || || || ||| | ||||| || || || ||| || | | || ||| Sbjct 7446172 TTTGGCTTTTTTTGCAGCCAGTGATGGCATCGTTAATGAAAACCTAACTTTGAACTTTTG 7446231 Query 64500 AAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAAAG 64559 || || || || || || ||||| || | || || | | || | ||||| Sbjct 7446232 TAACGAAGTCCAAATTCCCGAGGCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAA 7446291 Query 64560 TATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAGAA 64619 |||||| ||| | ||| || || ||||||| | | || |||||| || || Sbjct 7446292 CATTCATTCCGAAATGTACTCTCTTCTGATTGATACCTACATTAAGGATCCAGTGGAACG 7446351 Query 64620 GGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGC 64679 || |||| | || | |||| | || |||| |||| || || || ||||| Sbjct 7446352 CGACTTTTTGTTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGC 7446411 Query 64680 CATCCGGTGGATG---AATCGTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTG 64736 | ||||||| ||| | | | | | | |||| || | || || || Sbjct 7446412 TCTTAGGTGGATTGCAAATAGGAAAGCCCCATACGCTGAGCGGCTAGTGGCATTCGCTGC 7446471 Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796 ||| ||||| ||||||||||||| ||||| |||||| || ||||| || ||||| || Sbjct 7446472 TGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGTGG 7446531 Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCA 64856 || |||||||| || | || |||||| ||||| ||||| || || |||||| Sbjct 7446532 TCTCATGCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACAC 7446591 Query 64857 AGAATTTGC 64865 || ||||| Sbjct 7446592 CGATTTTGC 7446600 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 24977 GGCACCTATTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTA 25036 || || | ||||||| || || || |||| ||||||||||||| | |||| ||||| Sbjct 10412592 GGAACTTGTTGAGCTAGGTAATCTTAATGCGGAACGTGATTGGGGCTACGCAGAGGACTA 10412651 Query 25037 CGTCGACGCCATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCAC 25096 ||| |||| ||||||| |||||| |||||| | || ||| |||| | || || | | | Sbjct 10412652 TGTCTACGCGATGTGGCTCATGCTTCAACAGGAAAAACCAATGGATCTCGTTATTGCCTC 10412711 Query 25097 CGGTCAGACGCAT 25109 || ||| |||| Sbjct 10412712 GGGCGAGAAGCAT 10412724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570301724153040