Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 179 4e-40
seq1213 170 2e-37
seq1211 105 8e-18
seq1209 89.7 6e-13
>seq1207
Length=20116479
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || || || ||||| ||||| ||||| ||||||||||| ||| | |
Sbjct 13120444 ATGCAGATTTTCGTGAAAACTCTTACTGGCAAAACTATAACTCTTGAGGTCGAGCCTTCT 13120385
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
||| |||| ||| | |||||||| ||||| ||||||||||| ||||| ||||| |||
Sbjct 13120384 GATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAG 13120325
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||||||||| ||||| | ||||||| || || || | ||||| |||
Sbjct 13120324 CAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAAT 13120265
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || || ||||| || || | |||||||| |||||
Sbjct 13120264 ATTCAGAAGGAGTCAACCCTTCACCTTGTGCTTCGTCTTCGTGGTGG 13120218
Score = 163 bits (180), Expect = 3e-35
Identities = 162/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || || || || || ||||| || || ||||| || |||||||||||| || |
Sbjct 17430966 AATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAG 17430907
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||| | || |||| || ||||||||||| || ||||| || || ||||| ||
Sbjct 17430906 TGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGCCAGATCA 17430847
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| || || || || |||||||||||| | ||||||| || |||||| | ||||| ||
Sbjct 17430846 GCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAA 17430787
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614
| | |||||||| || || ||||| || ||
Sbjct 17430786 TATTCAAAAGGAGTCGACACTTCACCTTGT 17430757
>seq1213
Length=7437389
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||||||||| |||||||| || || |||||||| ||| | ||
Sbjct 1844118 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844177
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| |||| ||| ||||||| || || |||||||||||||| ||||| || || |||
Sbjct 1844178 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844237
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| | || || | || ||||| | ||||| |||
Sbjct 1844238 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAT 1844297
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || || ||||| || || | |||||||| |||||
Sbjct 1844298 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGG 1844344
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| ||||| ||||| |||||||| || || |||||||| ||| | ||
Sbjct 1844574 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844633
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| |||| ||| ||||||| || || |||||||||||||| ||||| || || |||
Sbjct 1844634 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844693
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| | || || | || ||||| | ||||| ||
Sbjct 1844694 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844753
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || ||||| ||||| || ||||||| ||||| ||
Sbjct 1844754 ATACAGAAGGAGTCGACTCTGCATCTTGTGCTGCGTCTCCGCGGCGG 1844800
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| ||||| ||||| |||||||| || || |||||||| ||| | ||
Sbjct 1844346 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844405
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| |||| ||| |||| || || || |||||||||||||| ||||| || || |||
Sbjct 1844406 GACTCGATTGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844465
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| | || || | || ||||| | ||||| ||
Sbjct 1844466 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844525
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || || ||||| || || | |||||||| |||||
Sbjct 1844526 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGG 1844572
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| ||||| ||||| |||||||| || || |||||||| ||| | ||
Sbjct 1838096 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1838037
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| |||| ||| ||||||| || || |||||||||||||| ||||| || || |||
Sbjct 1838036 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1837977
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| | || || | || ||||| | ||||| ||
Sbjct 1837976 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1837917
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || |||||||| || || | || || || || ||
Sbjct 1837916 ATTCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCCTGCGTGGCGG 1837870
Score = 140 bits (154), Expect = 4e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| || || || |||||||||||| | ||||||||| | ||
Sbjct 1838324 ATGCAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGT 1838265
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| || | ||| |||||||||| || || ||||| || || ||||| || || |||
Sbjct 1838264 GACTCGATAGAAAACGTGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCAG 1838205
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || ||||| | || || | || ||||| | ||||| ||
Sbjct 1838204 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1838145
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || || ||||| || || | |||||||| |||||
Sbjct 1838144 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGG 1838098
>seq1211
Length=11859842
Score = 105 bits (116), Expect = 8e-18
Identities = 237/356 (67%), Gaps = 0/356 (0%)
Strand=Plus/Minus
Query 32047 GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGC 32106
|| || |||||||| ||| ||| || ||| |||||| | |||| |||||||||
Sbjct 3458974 GAGATTAAGGTGGCTCAGTTGTGCGGTGCCGTTGCAGAGATGTCCTCCTACCACCACGGC 3458915
Query 32107 GAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAAC 32166
|||| ||| ||| |||||| || || || || ||| ||||||| ||| | || |||
Sbjct 3458914 GAGGTGTCTCTCATGGGCACTATCATCGGTCTAGCCCAGGACTTTGTAGGTTCCAACAAC 3458855
Query 32167 CTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCT 32226
|| || | || ||| | ||| ||||| || || || ||| |||| ||||| || |
Sbjct 3458854 CTCAATCTGCTGATGCCCTATGGTCAGTTCGGTACGCGTCTCTCCGGCGGCAAAGACTCC 3458795
Query 32227 GCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCG 32286
|| ||||||| ||||||||| |||| ||| || |||||||| || || |
Sbjct 3458794 GCTTCTGCCCGTTATATCTTCACCGCTCTCAGTCCTCTAACTCGCAAGATCTTTCACGAG 3458735
Query 32287 TCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTC 32346
|||||| | | | || ||| ||||| || |||| | | ||||| | ||
Sbjct 3458734 AACGACGATCCCATTTTAAACTACTTATTTGAGGATAATCAGAAGATTGAGCCCGCGTGG 3458675
Query 32347 TACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402
|| | || || | || ||| || | | ||||| || || || || || || ||
Sbjct 3458674 TATATGCCAGTCATCCCTATGGTCCTCATCAACGGAGCCGAGGGTATTGGCACAGG 3458619
>seq1209
Length=14622995
Score = 89.7 bits (98), Expect = 6e-13
Identities = 351/549 (64%), Gaps = 5/549 (1%)
Strand=Plus/Plus
Query 64321 TGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCGCC 64380
|||||| ||||||||||||| | || || ||||| || ||||| || ||| | ||
Sbjct 7446053 TGGGAGTTTTACAAGAAAGCTGTTGCCTCCTTTTGGACAGTTGAGGAAGTCGATTTGGCG 7446112
Query 64381 AAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTGGT 64439
||||| |||| || |||||| ||| || | | | |||| || ||||| | ||
Sbjct 7446113 AAGGACCTCACTGATTGGGAAGGCCTTAA-TGATGGCGAACGTCATTTCATATCTTATGT 7446171
Query 64440 CCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTTAC 64499
| || || || ||| | ||||| || || || ||| || | | || |||
Sbjct 7446172 TTTGGCTTTTTTTGCAGCCAGTGATGGCATCGTTAATGAAAACCTAACTTTGAACTTTTG 7446231
Query 64500 AAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAAAG 64559
|| || || || || || ||||| || | || || | | || | |||||
Sbjct 7446232 TAACGAAGTCCAAATTCCCGAGGCTCGTTGTTTTTACGGGATGCAAGTCGCCGTCGAAAA 7446291
Query 64560 TATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAGAA 64619
|||||| ||| | ||| || || ||||||| | | || |||||| || ||
Sbjct 7446292 CATTCATTCCGAAATGTACTCTCTTCTGATTGATACCTACATTAAGGATCCAGTGGAACG 7446351
Query 64620 GGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGC 64679
|| |||| | || | |||| | || |||| |||| || || || |||||
Sbjct 7446352 CGACTTTTTGTTTAACGCCGTTCAGACGCTGCCATGTGTTGCTAAGAAAGCCGATTGGGC 7446411
Query 64680 CATCCGGTGGATG---AATCGTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTG 64736
| ||||||| ||| | | | | | | |||| || | || || ||
Sbjct 7446412 TCTTAGGTGGATTGCAAATAGGAAAGCCCCATACGCTGAGCGGCTAGTGGCATTCGCTGC 7446471
Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796
||| ||||| ||||||||||||| ||||| |||||| || ||||| || ||||| ||
Sbjct 7446472 TGTTGAAGGCGTTTTCTTTTCTGGTTCATTTGCTTCTATCTTTTGGCTCAAGAAGCGTGG 7446531
Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCACCA 64856
|| |||||||| || | || |||||| ||||| ||||| || || ||||||
Sbjct 7446532 TCTCATGCCAGGCCTCACCTTCAGCAACGAGTTGATCAGCCGGGATGAAGGCCTCCACAC 7446591
Query 64857 AGAATTTGC 64865
|| |||||
Sbjct 7446592 CGATTTTGC 7446600
Score = 82.4 bits (90), Expect = 9e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 24977 GGCACCTATTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTA 25036
|| || | ||||||| || || || |||| ||||||||||||| | |||| |||||
Sbjct 10412592 GGAACTTGTTGAGCTAGGTAATCTTAATGCGGAACGTGATTGGGGCTACGCAGAGGACTA 10412651
Query 25037 CGTCGACGCCATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCAC 25096
||| |||| ||||||| |||||| |||||| | || ||| |||| | || || | | |
Sbjct 10412652 TGTCTACGCGATGTGGCTCATGCTTCAACAGGAAAAACCAATGGATCTCGTTATTGCCTC 10412711
Query 25097 CGGTCAGACGCAT 25109
|| ||| ||||
Sbjct 10412712 GGGCGAGAAGCAT 10412724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570301724153040
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