Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1213 93.3 3e-14 >seq1213 Length=7437389 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || |||||| ||||| || || || ||| Sbjct 1844344 CCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAA 1844285 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | || || || || ||||| | |||||| || ||||| || Sbjct 1844284 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844225 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||| || | || || | ||| | ||| ||| ||||| Sbjct 1844224 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACATTCTCAATCGAGTCACTCG-GCTCCA 1844167 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || || | ||| |||||||| |||||||| Sbjct 1844166 CCTCAAGTGTGATGGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || || || |||||| |||||||| || || ||| Sbjct 1844572 CCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1844513 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | || || || || ||||| | |||||| || ||||| || Sbjct 1844512 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844453 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||| || | ||| || | ||| | ||| ||| ||||| Sbjct 1844452 ATGCCCTCCTTGTCCTGGATC-TTCGCTTTCACATTCTCAATCGAGTCACTCG-GCTCCA 1844395 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || || | || |||||||| || ||||| Sbjct 1844394 CCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| ||| | ||| ||||| |||||| || ||||| || || ||| Sbjct 1844800 CCGCCGCGGAGACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAA 1844741 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | || || || || ||||| | |||||| || ||||| || Sbjct 1844740 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1844681 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||| || | || || | ||| | ||| ||| ||||| Sbjct 1844680 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACATTCTCAATCGAGTCACTCG-GCTCCA 1844623 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || || | || |||||||| || ||||| Sbjct 1844622 CCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||||| || ||||| |||||| |||||||| || || ||| Sbjct 1837870 CCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAA 1837929 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | || || || || ||||| | |||||| || ||||| || Sbjct 1837930 AGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGA 1837989 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||||||||| |||| || | || || | ||| | ||| ||| ||||| Sbjct 1837990 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTCACATTCTCAATCGAGTCACTCG-GCTCCA 1838047 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || || | || |||||||| || ||||| Sbjct 1838048 CCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724931871561