Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1213 158 1e-33
seq1207 132 4e-26
seq1210 100 2e-16
>seq1213
Length=7437389
Score = 158 bits (174), Expect = 1e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || || || |||||| | || || ||||| ||||| |||
Sbjct 1844346 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844405
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||||||||||||| || ||| || || || ||||| || ||||| ||||| |||||
Sbjct 1844406 GACTCGATTGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844465
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | |||| ||| || || || ||||||||| | ||| ||||||| ||||||
Sbjct 1844466 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844525
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||||||||| | || |||| | ||| | || ||||| ||
Sbjct 1844526 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGGTAT 1844575
Score = 156 bits (172), Expect = 4e-33
Identities = 173/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046
|||||||||||| || || || || || || ||| |||||||| | || || || ||
Sbjct 1838325 CATGCAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAG 1838266
Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106
|||||||| || | || || || || ||||||||||||||||| ||||| |||||
Sbjct 1838265 TGACTCGATAGAAAACGTGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCA 1838206
Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166
|||||| | |||| ||| || || || ||||||||| | ||| ||||||| |||||
Sbjct 1838205 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1838146
Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||| ||||||||||| | || |||| | ||| | || ||||| ||
Sbjct 1838145 CATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGGTAT 1838095
Score = 154 bits (170), Expect = 1e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || || || || |||||| | || || ||||| ||||| |||
Sbjct 1844118 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844177
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||||||||||||| || || || || || ||||| || ||||| ||||| |||||
Sbjct 1844178 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844237
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | |||| ||| || || || ||||||||| | ||| ||||||| |||||
Sbjct 1844238 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAT 1844297
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||||| ||||||||||| | || |||| | ||| | || ||||| ||
Sbjct 1844298 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGGTAT 1844347
Score = 149 bits (164), Expect = 5e-31
Identities = 151/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || || || |||||| | || || ||||| ||||| |||
Sbjct 1838096 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1838037
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||||||||||||| || || || || || ||||| || ||||| ||||| |||||
Sbjct 1838036 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1837977
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | |||| ||| || || || ||||||||| | ||| ||||||| ||||||
Sbjct 1837976 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1837917
Query 27168 ATTCAAAAGGAGTCGAC 27184
||||| |||||||||||
Sbjct 1837916 ATTCAGAAGGAGTCGAC 1837900
Score = 149 bits (164), Expect = 5e-31
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || || || |||||| | || || ||||| ||||| |||
Sbjct 1844574 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844633
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||||||||||||| || || || || || ||||| || ||||| ||||| |||||
Sbjct 1844634 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844693
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||| | |||| ||| || || || ||||||||| | ||| ||||||| ||||||
Sbjct 1844694 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844753
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || ||||||||||| | ||| | || ||||| | || || ||
Sbjct 1844754 ATACAGAAGGAGTCGACTCTGCATCTTGTGCTGCGTCTCCGCGGCGG 1844800
>seq1207
Length=20116479
Score = 132 bits (146), Expect = 4e-26
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043
|| ||||||||| || || |||||||| || ||||| |||| |||||||| || || ||
Sbjct 13120448 CGGCATGCAGATTTTCGTGAAAACTCTTACTGGCAAAACTATAACTCTTGAGGTCGAGCC 13120389
Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103
|| || || ||||||| || || || ||||||||||| || || || ||||| ||
Sbjct 13120388 TTCTGATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGA 13120329
Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163
||| |||||| | || | || ||||| || ||||| || | | || | || || ||
Sbjct 13120328 TCAGCAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTA 13120269
Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
||| ||||| |||||||| ||| | || | || | ||| | || |||||
Sbjct 13120268 CAATATTCAGAAGGAGTCAACCCTTCACCTTGTGCTTCGTCTTCGTGGTGG 13120218
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| || ||||||||||| || || || |||| || ||||| || || ||
Sbjct 17430965 ATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAGT 17430906
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| || || |||| || ||| |||||||| || ||||| || ||||| || |||||
Sbjct 17430905 GATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGCCAGATCAG 17430846
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| || | || | ||| || || ||||| || || | ||| | ||||| |||||
Sbjct 17430845 CAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAAT 17430786
Query 27168 ATTCAAAAGGAGTCGAC 27184
|||||||||||||||||
Sbjct 17430785 ATTCAAAAGGAGTCGAC 17430769
>seq1210
Length=13762452
Score = 100 bits (110), Expect = 2e-16
Identities = 76/90 (84%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 135473 TTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGC 135532
|||||||||||||| ||||| ||||| ||||| |||||||||||||||||| ||||
Sbjct 12274757 TTGTGGAACGCGGCTCAACGCCAGCTGCGCCGAGAGGGCAAAATGCACGGATTTCTGCGG 12274816
Query 135533 ATGTATTGGGCAAAAAAGATATTGGAATGG 135562
||||| ||||| |||||||| | ||||||
Sbjct 12274817 ATGTACTGGGCCAAAAAGATCCTTGAATGG 12274846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434911783803840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |