Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1213 158 1e-33 seq1207 132 4e-26 seq1210 100 2e-16 >seq1213 Length=7437389 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || |||||| | || || ||||| ||||| ||| Sbjct 1844346 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844405 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||||| || ||| || || || ||||| || ||||| ||||| ||||| Sbjct 1844406 GACTCGATTGAGAATGTGAAAGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844465 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| ||| || || || ||||||||| | ||| ||||||| |||||| Sbjct 1844466 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844525 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || |||| | ||| | || ||||| || Sbjct 1844526 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGGTAT 1844575 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||||||| || || || || || || ||| |||||||| | || || || || Sbjct 1838325 CATGCAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAG 1838266 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||||| || | || || || || ||||||||||||||||| ||||| ||||| Sbjct 1838265 TGACTCGATAGAAAACGTGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCA 1838206 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | |||| ||| || || || ||||||||| | ||| ||||||| ||||| Sbjct 1838205 GCAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAA 1838146 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||||||||| | || |||| | ||| | || ||||| || Sbjct 1838145 CATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGGTAT 1838095 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || ||||| ||||| ||| Sbjct 1844118 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844177 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||||| || || || || || ||||| || ||||| ||||| ||||| Sbjct 1844178 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844237 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| ||| || || || ||||||||| | ||| ||||||| ||||| Sbjct 1844238 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAT 1844297 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || |||| | ||| | || ||||| || Sbjct 1844298 ATTCAGAAGGAGTCGACACTTCACCTGGTGCTTCGTCTTCGTGGTGGTAT 1844347 Score = 149 bits (164), Expect = 5e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || |||||| | || || ||||| ||||| ||| Sbjct 1838096 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1838037 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||||| || || || || || ||||| || ||||| ||||| ||||| Sbjct 1838036 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1837977 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| ||| || || || ||||||||| | ||| ||||||| |||||| Sbjct 1837976 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1837917 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| ||||||||||| Sbjct 1837916 ATTCAGAAGGAGTCGAC 1837900 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || |||||| | || || ||||| ||||| ||| Sbjct 1844574 ATGCAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGAGCCGAGT 1844633 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||||||||||| || || || || || ||||| || ||||| ||||| ||||| Sbjct 1844634 GACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAG 1844693 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| ||| || || || ||||||||| | ||| ||||||| |||||| Sbjct 1844694 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1844753 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| | ||| | || ||||| | || || || Sbjct 1844754 ATACAGAAGGAGTCGACTCTGCATCTTGTGCTGCGTCTCCGCGGCGG 1844800 >seq1207 Length=20116479 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || |||||||| || ||||| |||| |||||||| || || || Sbjct 13120448 CGGCATGCAGATTTTCGTGAAAACTCTTACTGGCAAAACTATAACTCTTGAGGTCGAGCC 13120389 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || || || ||||||| || || || ||||||||||| || || || ||||| || Sbjct 13120388 TTCTGATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGA 13120329 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||| |||||| | || | || ||||| || ||||| || | | || | || || || Sbjct 13120328 TCAGCAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTA 13120269 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| ||||| |||||||| ||| | || | || | ||| | || ||||| Sbjct 13120268 CAATATTCAGAAGGAGTCAACCCTTCACCTTGTGCTTCGTCTTCGTGGTGG 13120218 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||||||||| || || || |||| || ||||| || || || Sbjct 17430965 ATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCAAGT 17430906 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || || |||| || ||| |||||||| || ||||| || ||||| || ||||| Sbjct 17430905 GATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGCCAGATCAG 17430846 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||| || || ||||| || || | ||| | ||||| ||||| Sbjct 17430845 CAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTACAAT 17430786 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||||||||||||||| Sbjct 17430785 ATTCAAAAGGAGTCGAC 17430769 >seq1210 Length=13762452 Score = 100 bits (110), Expect = 2e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 135473 TTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGC 135532 |||||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||| Sbjct 12274757 TTGTGGAACGCGGCTCAACGCCAGCTGCGCCGAGAGGGCAAAATGCACGGATTTCTGCGG 12274816 Query 135533 ATGTATTGGGCAAAAAAGATATTGGAATGG 135562 ||||| ||||| |||||||| | |||||| Sbjct 12274817 ATGTACTGGGCCAAAAAGATCCTTGAATGG 12274846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434911783803840