Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 154 3e-32
seq1213 143 6e-29
>seq1207
Length=20116479
Score = 154 bits (170), Expect = 3e-32
Identities = 171/227 (75%), Gaps = 6/227 (3%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||||||| ||||||||||| || ||||| ||||| || || || || | |||||
Sbjct 17430745 CGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGATAGGGTT 17430804
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| || | ||||| || ||||||||||||||||| || || || || | ||
Sbjct 17430805 CGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCC 17430864
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070
|| || ||||| || || ||||||||| ||||||| ||| ||| ||||||||
Sbjct 17430865 TCTTTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATCA---CTTGGCTCAACCTCA 17430921
Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || || ||||| || ||||| ||||| || | |||||||||
Sbjct 17430922 AGTGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCATTTT 17430968
Score = 116 bits (128), Expect = 9e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || ||||||||||| || ||||| || || || || || || | | ||
Sbjct 13120223 ACGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGA 13120282
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
|| ||||| |||| ||||||||| || || ||||| || || || || || |||| ||
Sbjct 13120283 CCGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACC 13120342
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||| || ||||| || || || || || | ||||| || ||||| ||
Sbjct 13120343 CTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAG 13120402
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || || || || || ||||| || || || | ||||||
Sbjct 13120403 AGTTATAGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444
>seq1213
Length=7437389
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || |||||||| || ||||| || || ||||| || || | ||||||
Sbjct 1838103 ACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGT 1838162
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || ||||||| |||||| || ||||| || || || || || || || |||| ||
Sbjct 1838163 GCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCC 1838222
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||| ||||| || ||||| ||||||||||| || | |||| |||||||| |
Sbjct 1838223 TTCTTTGTCTTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAA 1838282
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || |||||||| ||||| ||||| || || | ||||||
Sbjct 1838283 AGTAATAGTCTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 1838324
Score = 140 bits (154), Expect = 8e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || |||||||| || ||||| || || ||||| || || | ||||||
Sbjct 1844567 ACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGT 1844508
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || ||||||| |||||| || ||||| || || || || || || || |||| ||
Sbjct 1844507 GCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCC 1844448
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| |||||| || || || | |||| || ||||| ||
Sbjct 1844447 CTCCTTGTCCTGGATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAG 1844388
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || || || ||||| ||||| | |||||
Sbjct 1844387 TGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||||||||||| ||||| || || ||||| || || | |||||| | || |||
Sbjct 1837885 AGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 1837944
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| |||||| || ||||| || || || || || || || |||| || |||||||||
Sbjct 1837945 TCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCC 1838004
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || || || | |||| || ||||| || ||||| |||
Sbjct 1838005 TGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTC 1838064
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| ||||| | |||||
Sbjct 1838065 TTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096
Score = 134 bits (148), Expect = 3e-26
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || |||||||| || ||||| || || || || || || | ||||||
Sbjct 1844339 ACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGT 1844280
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || ||||||| |||||| || ||||| || || || || || || || |||| ||
Sbjct 1844279 GCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCC 1844220
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| ||||| || || || | |||| || ||||| ||
Sbjct 1844219 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAG 1844160
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || || || ||||| ||||| | ||||||
Sbjct 1844159 TGTGATGGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||| || ||||| ||||| || || ||||| || || | |||||| | || |||
Sbjct 1844785 AGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 1844726
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| |||||| || ||||| || || || || || || || |||| || |||||||||
Sbjct 1844725 TCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCC 1844666
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| ||||| || || || | |||| || ||||| || ||||| |||
Sbjct 1844665 TGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTC 1844606
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| ||||| | |||||
Sbjct 1844605 TTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159133925560205
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |