Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1213 102 7e-17 >seq1213 Length=7437389 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || ||||| || |||| ||| || || |||| || Sbjct 1844327 CACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1844268 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || ||||| ||||| ||||||||||| || | || | || ||| |||||| Sbjct 1844267 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTG 1844208 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| || | || | | || || |||| |||||| || | ||||| | || Sbjct 1844207 GATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTT 1844148 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || || ||||| || |||||||| |||||| Sbjct 1844147 GCCAGTAAGCGTCTTCACAAAGATCTGCATC 1844117 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| || || || || || |||| ||| || || |||| || Sbjct 1844555 CACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1844496 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || ||||| ||||| ||||||||||| || | || | || ||| |||||| Sbjct 1844495 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTG 1844436 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| ||| | || | | || || |||| |||||| || | ||||| | || Sbjct 1844435 GATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTT 1844376 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || |||||||||||||| Sbjct 1844375 GCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||| || ||||| || || |||| ||| || || |||| || Sbjct 1844783 CACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1844724 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| || ||||| ||||| ||||||||||| || | || | || ||| |||||| Sbjct 1844723 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTG 1844664 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| || | || | | || || |||| |||||| || | ||||| | || Sbjct 1844663 GATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTT 1844604 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || |||||||||||||| Sbjct 1844603 GCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || |||| ||| || || | Sbjct 1837881 GCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCC 1837940 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || | ||| || ||||| ||||| ||||||||||| || | || | || ||| || Sbjct 1837941 GTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTT 1838000 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||| || | || | | || || |||| |||||| || | ||||| Sbjct 1838001 GTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGAT 1838060 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || |||||||||||||| Sbjct 1838061 GGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429539228899121