Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1207 109 4e-19 seq1213 91.5 1e-13 >seq1207 Length=20116479 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| ||||| || || |||||||| || || || || ||||| | Sbjct 17430968 AAAATGCAGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGAGCCA 17430909 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || | | || | | ||| |||||| || ||||| ||| ||||||||||| Sbjct 17430908 AGTGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGCCAGAT 17430849 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || || | || || || || || ||| | || || | || || || ||| ||| Sbjct 17430848 CAGCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCGACTAC 17430789 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| ||||| ||| | || | ||| |||| | |||||||| Sbjct 17430788 AATATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACTACGAGGAGG 17430739 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| || || || ||||| || ||||| || || || | | Sbjct 13120444 ATGCAGATTTTCGTGAAAACTCTTACTGGCAAAACTATAACTCTTGAGGTCGAGCCTTCT 13120385 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | |||| || ||| ||||| || ||| | || |||||||| Sbjct 13120384 GATTCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAG 13120325 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || |||| || | || | ||| || ||||| Sbjct 13120324 CAGCGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAAT 13120265 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 13120264 ATTCAGAAGGAGTCAAC 13120248 >seq1213 Length=7437389 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||| ||||| || || ||| | || ||||| | | Sbjct 1838324 ATGCAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGAGCCTAGT 1838265 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| | | |||| | || || || ||||||||||| | || || ||||| Sbjct 1838264 GACTCGATAGAAAACGTGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCAG 1838205 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | ||||| || || || || ||||||||| ||||| | ||| |||||| Sbjct 1838204 CAGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAAC 1838145 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||||| ||| Sbjct 1838144 ATTCAGAAGGAGTCGACA 1838127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004586578236