Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 123 6e-23
>seq1207
Length=20116479
Score = 123 bits (136), Expect = 6e-23
Identities = 164/225 (73%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| ||||| || |||||||| || || || || ||||| | |||||| |||| | |||
Sbjct 17430745 CGTAGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGATAGGGTT 17430804
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||| |||| ||||| |||||||||||||| ||||| || || ||||| |||||
Sbjct 17430805 CGCCCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCC 17430864
Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|| || || || || ||| || ||||| ||||||| || | || || || |
Sbjct 17430865 TCTTTATCCTGAAT-TTTCGCTTTCACGTTCTCGATGGAATCACTTGGCTCAACCTCAAG 17430923
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| || || || || || | |||||||| ||| | ||||||||
Sbjct 17430924 TGTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCATTTT 17430968
Score = 107 bits (118), Expect = 5e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || |||||||| || || || || || || | |||||| || | || |
Sbjct 13120223 ACGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGA 13120282
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||| || | |||||| ||||| || ||||| || || || || || ||||||||
Sbjct 13120283 CCGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACC 13120342
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||||| ||||| ||| ||| || || | || || | || || || |
Sbjct 13120343 CTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAG 13120402
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || ||||| || | |||||| | ||| | |||||
Sbjct 13120403 AGTTATAGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192512605084598
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |