Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 197 1e-45
>seq1209
Length=14622995
Score = 197 bits (218), Expect = 1e-45
Identities = 505/761 (66%), Gaps = 12/761 (2%)
Strand=Plus/Minus
Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439
|| || || ||||| ||| || |||| ||| || || || || ||||| | |
Sbjct 7446771 CGATCGGCAACAAACCTTATGTATTGGCACATTAGGCGACAATTCATGCCAATAAGATTG 7446712
Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499
||||||| |||| ||| | ||| || ||| || | || || || | || || ||
Sbjct 7446711 ACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCTAACCGCCTCCCTCATAATGTCA 7446652
Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA-CACGCAAAATC 4558
| | | | || | ||||| || || | | | ||| ||||| || ||||||||
Sbjct 7446651 TAAACTCTTGCTGCCGTAGGTTTGTTGACAATATGTTTAAA-AATAAGGCATGCAAAATC 7446593
Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618
|| | ||||| || | ||| |||| ||||| || || | || ||||| |
Sbjct 7446592 GGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCTGGCATGAG 7446533
Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678
||| | ||| || |||||||| |||| |||||||| ||||||||||| | |||||| ||
Sbjct 7446532 ACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAAAACGCCTTCAAC 7446473
Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG-TCTTT--AATCCATTT 4735
|| || || || |||| || || | | | ||||| | ||| |||||| |
Sbjct 7446472 AGCAGCGAATGCCACTAGCCGCTCAGCGTATGGG---GCTTTCCTATTTGCAATCCACCT 7446416
Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTT 4795
| ||||| | ||||| || ||| || || | || | | |||||||| ||
Sbjct 7446415 AAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGCGTTAAACAAAAA 7446356
Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855
||| | ||| || | ||| || || || || || || |||||||| |||||
Sbjct 7446355 GTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTACATTTCGGAATG 7446296
Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| ||||| | || | || | |||||||| || | ||| || | | ||| |||||
Sbjct 7446295 AATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGAGCCTCGGGAATTTGGACTTC 7446236
Query 4916 GTTACAAAATCTTTCTAC--TAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973
||||||||| ||| | || |||||| || || || || |||||||||||||||||
Sbjct 7446235 GTTACAAAAG--TTCAAAGTTAGGTTTTCATTAACGATGCCATCACTGGCTGCAAAAAAA 7446178
Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033
|||||||||| |||||| || | ||||| || ||||| || ||| | | |
Sbjct 7446177 GCCAAAACATAAGATATGAAATGACGTTCGCCATCATTAAGGCCTTCCCAATCAGTGAGG 7446118
Query 5034 TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATA 5093
|| || | ||||| ||||| ||||| |||||||| || || | ||||| ||||| |
Sbjct 7446117 TCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGAGGCAACAGCTTTCTTGTAAAAC 7446058
Query 5094 GACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134
||| || ||| |||| || || || | | ||||||||
Sbjct 7446057 TCCCAGATGTCATGATATTGGATGGGCATCACAACAAATCT 7446017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427043265920261
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |