Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1209 197 1e-45 >seq1209 Length=14622995 Score = 197 bits (218), Expect = 1e-45 Identities = 505/761 (66%), Gaps = 12/761 (2%) Strand=Plus/Minus Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439 || || || ||||| ||| || |||| ||| || || || || ||||| | | Sbjct 7446771 CGATCGGCAACAAACCTTATGTATTGGCACATTAGGCGACAATTCATGCCAATAAGATTG 7446712 Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499 ||||||| |||| ||| | ||| || ||| || | || || || | || || || Sbjct 7446711 ACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCTAACCGCCTCCCTCATAATGTCA 7446652 Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA-CACGCAAAATC 4558 | | | | || | ||||| || || | | | ||| ||||| || |||||||| Sbjct 7446651 TAAACTCTTGCTGCCGTAGGTTTGTTGACAATATGTTTAAA-AATAAGGCATGCAAAATC 7446593 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 || | ||||| || | ||| |||| ||||| || || | || ||||| | Sbjct 7446592 GGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTGCTGAAGGTGAGGCCTGGCATGAG 7446533 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 ||| | ||| || |||||||| |||| |||||||| ||||||||||| | |||||| || Sbjct 7446532 ACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAACCAGAAAAGAAAACGCCTTCAAC 7446473 Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG-TCTTT--AATCCATTT 4735 || || || || |||| || || | | | ||||| | ||| |||||| | Sbjct 7446472 AGCAGCGAATGCCACTAGCCGCTCAGCGTATGGG---GCTTTCCTATTTGCAATCCACCT 7446416 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTT 4795 | ||||| | ||||| || ||| || || | || | | |||||||| || Sbjct 7446415 AAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTCTGAACGGCGTTAAACAAAAA 7446356 Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 ||| | ||| || | ||| || || || || || || |||||||| ||||| Sbjct 7446355 GTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCAGAAGAGAGTACATTTCGGAATG 7446296 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || ||||| | || | || | |||||||| || | ||| || | | ||| ||||| Sbjct 7446295 AATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAACGAGCCTCGGGAATTTGGACTTC 7446236 Query 4916 GTTACAAAATCTTTCTAC--TAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973 ||||||||| ||| | || |||||| || || || || ||||||||||||||||| Sbjct 7446235 GTTACAAAAG--TTCAAAGTTAGGTTTTCATTAACGATGCCATCACTGGCTGCAAAAAAA 7446178 Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 |||||||||| |||||| || | ||||| || ||||| || ||| | | | Sbjct 7446177 GCCAAAACATAAGATATGAAATGACGTTCGCCATCATTAAGGCCTTCCCAATCAGTGAGG 7446118 Query 5034 TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATA 5093 || || | ||||| ||||| ||||| |||||||| || || | ||||| ||||| | Sbjct 7446117 TCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGAGGCAACAGCTTTCTTGTAAAAC 7446058 Query 5094 GACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 ||| || ||| |||| || || || | | |||||||| Sbjct 7446057 TCCCAGATGTCATGATATTGGATGGGCATCACAACAAATCT 7446017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427043265920261