Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1209 217 2e-51 seq1207 183 4e-41 >seq1209 Length=14622995 Score = 217 bits (240), Expect = 2e-51 Identities = 437/640 (68%), Gaps = 10/640 (2%) Strand=Plus/Minus Query 48121 ACAA-ATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATT 48179 |||| ||||||||| || | ||||||||||| || || |||||||| | || || Sbjct 7446624 ACAATATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATC 7446565 Query 48180 AATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCC 48239 || ||||| || ||||| || ||||| || ||||| || ||||||||||| || | Sbjct 7446564 AACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAA 7446505 Query 48240 GCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCG 48299 || || || ||||||||||| | |||||| || || || ||||| || | ||| || Sbjct 7446504 GCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCG 7446445 Query 48300 TAACTGGCTT--CGTTGTG-TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAA 48356 || ||||| | | || ||||||| | |||||||| || ||||| ||||| Sbjct 7446444 TATGGGGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACAT 7446385 Query 48357 GGCATTGTTTCTATAGCATTAAAGAGAAAGt-ttttttCATTGCTATCTTTAACGTAAGT 48415 |||| || | | || ||||| | ||||| || || || ||| |||| ||| || Sbjct 7446384 GGCAGCGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTG-GATCCTTAATGTAGGT 7446326 Query 48416 ATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTA 48475 ||| || | |||| ||||||||||| ||||| ||||| | || | || | ||||| Sbjct 7446325 ATCAATCAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTA 7446266 Query 48476 AAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC--AGCCAAATTCTCA 48533 |||||| | || || | || || || || ||||||| |||| || | || ||| Sbjct 7446265 AAAACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCA 7446208 Query 48534 TTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCG 48593 || || || |||||||| || |||||||| || || |||| || |||| |||| Sbjct 7446207 TTAACGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCG 7446148 Query 48594 TTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 48653 | | || | ||| ||| ||| || || | | ||| ||||| ||| ||||| Sbjct 7446147 CCATCATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTC 7446088 Query 48654 CAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAA 48713 ||||| || || | ||||| || || | | ||| || ||| |||||||| || | Sbjct 7446087 CAAAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATC 7446028 Query 48714 ATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTCCA 48753 | ||||||||| ||||| |||| | |||||||| Sbjct 7446027 ACAACAAATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 7445988 >seq1207 Length=20116479 Score = 183 bits (202), Expect = 4e-41 Identities = 419/626 (67%), Gaps = 6/626 (1%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 || || ||| ||||||||| || |||||| ||| | | || |||||||| | ||| Sbjct 7939332 GTGTAGAGCGTTTCAAATTCCTCCCCCCAAGAGTCAGCAAGACCGGGGCATTCGTGGGGG 7939273 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||| || | ||| ||| || | | ||| || ||||| || ||||| || ||||| Sbjct 7939272 TCCATAAAGGTCCATGGGCCACCTGCTTCAACACGCTTCATGAATAGATCCGGAATCCAA 7939213 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092 || |||| || |||||||| | | | ||| || || || ||||| | || Sbjct 7939212 AGTGCAAGGAAAAGATCTCGCGCACGAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCC 7939153 Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152 | ||||| || | ||| | |||||| ||||| ||||| || || | | || ||||| Sbjct 7939152 ACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGC 7939093 Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 ||||| || |||||||| | ||| | || || | || | || | | ||| || | | Sbjct 7939092 TTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTGAAGACCCGAAGCATCGGCACA 7939033 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGC-GAATATTACT 78271 | |||||| || ||||| || |||| || || | || ||| | | | ||| | Sbjct 7939032 AGACCGTTGGACTCGCCATTGGTCCCAGCGATGAAAGTGCC-CTTACTCCGGATACAATG 7938974 Query 78272 AA--TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTA 78329 || | || | || ||||| || || | || || || || || || |||| | ||| Sbjct 7938973 AACATTGAGA--CCAATTCCACCAGCACTTTTTGAGATAAGTGCACATTGTTTGAGCGTA 7938916 Query 78330 TCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA 78389 || || || ||||| ||||||||||| |||| |||| | ||| ||||| ||||| ||| Sbjct 7938915 TCATATATGCCCTCGATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGA 7938856 Query 78390 TGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAA 78449 | | | || || |||||||| | || || || ||||| ||||| ||||| || Sbjct 7938855 GGGTTAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCATGAACCAACCACTTTTCGGAC 7938796 Query 78450 AGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACA 78509 | |||||||| || |||||||| | || | ||| ||| || || | | || Sbjct 7938795 ATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCACCATGGATGCCGATAGAGACG 7938736 Query 78510 CGCATCAACATATGCTGAGGTCTTTC 78535 ||||| ||||||| ||| || || || Sbjct 7938735 CGCATAAACATATACTGGGGCCTCTC 7938710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694658232350880