Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 217 2e-51
seq1207 183 4e-41
>seq1209
Length=14622995
Score = 217 bits (240), Expect = 2e-51
Identities = 437/640 (68%), Gaps = 10/640 (2%)
Strand=Plus/Minus
Query 48121 ACAA-ATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATT 48179
|||| ||||||||| || | ||||||||||| || || |||||||| | || ||
Sbjct 7446624 ACAATATGTTTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATC 7446565
Query 48180 AATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCC 48239
|| ||||| || ||||| || ||||| || ||||| || ||||||||||| || |
Sbjct 7446564 AACTCGTTGCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAA 7446505
Query 48240 GCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCG 48299
|| || || ||||||||||| | |||||| || || || ||||| || | ||| ||
Sbjct 7446504 GCAAATGAACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCG 7446445
Query 48300 TAACTGGCTT--CGTTGTG-TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAA 48356
|| ||||| | | || ||||||| | |||||||| || ||||| |||||
Sbjct 7446444 TATGGGGCTTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACAT 7446385
Query 48357 GGCATTGTTTCTATAGCATTAAAGAGAAAGt-ttttttCATTGCTATCTTTAACGTAAGT 48415
|||| || | | || ||||| | ||||| || || || ||| |||| ||| ||
Sbjct 7446384 GGCAGCGTCTGAACGGCGTTAAACAAAAAGTCGCGTTCCACTG-GATCCTTAATGTAGGT 7446326
Query 48416 ATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTA 48475
||| || | |||| ||||||||||| ||||| ||||| | || | || | |||||
Sbjct 7446325 ATCAATCAGAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTA 7446266
Query 48476 AAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC--AGCCAAATTCTCA 48533
|||||| | || || | || || || || ||||||| |||| || | || |||
Sbjct 7446265 AAAACAACGAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCA 7446208
Query 48534 TTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCG 48593
|| || || |||||||| || |||||||| || || |||| || |||| ||||
Sbjct 7446207 TTAACGATGCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCG 7446148
Query 48594 TTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 48653
| | || | ||| ||| ||| || || | | ||| ||||| ||| |||||
Sbjct 7446147 CCATCATTAAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTC 7446088
Query 48654 CAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAA 48713
||||| || || | ||||| || || | | ||| || ||| |||||||| || |
Sbjct 7446087 CAAAAGGAGGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATC 7446028
Query 48714 ATAACAAATCTATTTGGATTTTTTGCAAGGATAGGTTCCA 48753
| ||||||||| ||||| |||| | ||||||||
Sbjct 7446027 ACAACAAATCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 7445988
>seq1207
Length=20116479
Score = 183 bits (202), Expect = 4e-41
Identities = 419/626 (67%), Gaps = 6/626 (1%)
Strand=Plus/Minus
Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972
|| || ||| ||||||||| || |||||| ||| | | || |||||||| | |||
Sbjct 7939332 GTGTAGAGCGTTTCAAATTCCTCCCCCCAAGAGTCAGCAAGACCGGGGCATTCGTGGGGG 7939273
Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032
||| || | ||| ||| || | | ||| || ||||| || ||||| || |||||
Sbjct 7939272 TCCATAAAGGTCCATGGGCCACCTGCTTCAACACGCTTCATGAATAGATCCGGAATCCAA 7939213
Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092
|| |||| || |||||||| | | | ||| || || || ||||| | ||
Sbjct 7939212 AGTGCAAGGAAAAGATCTCGCGCACGAGCTTCCTCGGCACCAGTGTTCTTCCGTAATTCC 7939153
Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152
| ||||| || | ||| | |||||| ||||| ||||| || || | | || |||||
Sbjct 7939152 ACAAACTGCAGCACATCCGGATGCCACGGTTCGAGATAAATGGCAAAGGCACCGGGTCGC 7939093
Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212
||||| || |||||||| | ||| | || || | || | || | | ||| || | |
Sbjct 7939092 TTATTGCCCCCCTGATCAACATACCGAGCAGTACTGTTGAAGACCCGAAGCATCGGCACA 7939033
Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGC-GAATATTACT 78271
| |||||| || ||||| || |||| || || | || ||| | | | ||| |
Sbjct 7939032 AGACCGTTGGACTCGCCATTGGTCCCAGCGATGAAAGTGCC-CTTACTCCGGATACAATG 7938974
Query 78272 AA--TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTA 78329
|| | || | || ||||| || || | || || || || || || |||| | |||
Sbjct 7938973 AACATTGAGA--CCAATTCCACCAGCACTTTTTGAGATAAGTGCACATTGTTTGAGCGTA 7938916
Query 78330 TCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGA 78389
|| || || ||||| ||||||||||| |||| |||| | ||| ||||| ||||| |||
Sbjct 7938915 TCATATATGCCCTCGATACTGTCATCTTTCATCGTAAGCAAAAAGCAGCTGGACATCTGA 7938856
Query 78390 TGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAA 78449
| | | || || |||||||| | || || || ||||| ||||| ||||| ||
Sbjct 7938855 GGGTTAGGCGTCCCAGCATTAAAAAGAGTGGGTGAAGCATGAACCAACCACTTTTCGGAC 7938796
Query 78450 AGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACA 78509
| |||||||| || |||||||| | || | ||| ||| || || | | ||
Sbjct 7938795 ATGAGATTGTACGTCTCAATAGCAGCATCAAGATCCTCACCATGGATGCCGATAGAGACG 7938736
Query 78510 CGCATCAACATATGCTGAGGTCTTTC 78535
||||| ||||||| ||| || || ||
Sbjct 7938735 CGCATAAACATATACTGGGGCCTCTC 7938710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694658232350880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |