Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1209 279 7e-70 >seq1209 Length=14622995 Score = 279 bits (308), Expect = 7e-70 Identities = 518/752 (69%), Gaps = 15/752 (2%) Strand=Plus/Minus Query 46500 ACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGT 46559 ||||||||| || || || ||||| |||| || || || ||||| || |||||| | Sbjct 7446733 ACAATTCATGCCAATAAGATTGACAGGTAATGCGTCTGTGAGAAATTCGCATTCAATGCT 7446674 Query 46560 GACAGCATCCG--ATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGT 46617 || || ||| ||| | || || ||| || | | | ||| | | | |||| Sbjct 7446673 AACCGCCTCCCTCATAATGTC-ATAA-ACTCTTGCTGCCGTAGGTTTGTTGACAATATGT 7446616 Query 46618 TTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTA 46677 ||||| || | ||||||||||| || ||||||||||| | || || || ||||| Sbjct 7446615 TTAAAAATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTTG 7446556 Query 46678 GAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT 46737 || ||||| || ||||| || |||||||| ||||||||||| |||| || || || Sbjct 7446555 CTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGAA 7446496 Query 46738 CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCA 46797 ||||||||||| | |||||| ||||| |||||||| || || | ||| |||| ||| Sbjct 7446495 CCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGGGGCT 7446436 Query 46798 T---CATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTT 46854 | ||| ||||||||| |||||||||| || || || ||||| |||| || Sbjct 7446435 TTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGTC 7446376 Query 46855 TCTATAGCATTAAAGAGAAAGtttttttCATCACT--ATCTTTAACATATGTATCTATTA 46912 | | || ||||| | ||||| ||| |||| ||| |||| || ||||| || | Sbjct 7446375 TGAACGGCGTTAAACAAAAAGTCGCGTTC--CACTGGATCCTTAATGTAGGTATCAATCA 7446318 Query 46913 AAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATC 46972 |||| |||||||| |||||||||||||| | || | || | ||||||||||| | Sbjct 7446317 GAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAAC 7446258 Query 46973 TTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC--AGACAAATTCTCATTCACTAT 47030 || || | ||| || || || ||||||| |||| || | || ||||| || || Sbjct 7446257 GAGCCTCGGGAATTTGGACTTCGTTACAAAA--GTTCAAAGTTAGGTTTTCATTAACGAT 7446200 Query 47031 TCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGT 47090 |||||||| || |||||||| ||||| |||| || |||| ||| | | | Sbjct 7446199 GCCATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCATCATT 7446140 Query 47091 CAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGA 47150 || | ||| ||| ||| || || | | ||| ||||| ||| ||||||| || || Sbjct 7446139 AAGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAAGGA 7446080 Query 47151 CGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 || | ||||| || || | | ||| || ||| |||||||||| || | | |||||| Sbjct 7446079 GGCAACAGCTTTCTTGTAAAACTCCCAGATGTCATGATATTGGATGGGCATCACAACAAA 7446020 Query 47211 TCTATTTGGATTTTTTGCAAGTATAGGTTCCA 47242 ||| ||||| |||||| |||||||| Sbjct 7446019 TCTTCGAGGATTGGGAACAAGTAAAGGTTCCA 7445988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712923554485440