Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 122 2e-22
seq1213 87.8 4e-12
>seq1207
Length=20116479
Score = 122 bits (134), Expect = 2e-22
Identities = 162/224 (72%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| || ||||| ||||| || ||||| ||||| || ||||| |||| || |||| |
Sbjct 17430748 AGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGC 17430807
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
||||| |||| || || ||||||||||| | ||||| || | || || || ||
Sbjct 17430808 CCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCT 17430867
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063
|| || |||||||| ||| || |||| | | || ||| ||| || |||||
Sbjct 17430868 TTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATC---ACTTGGCTCAACCTCAAGT 17430924
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| |||||||| || || ||||| || ||||| | |||||||||
Sbjct 17430925 GTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCATTTT 17430968
Score = 107 bits (118), Expect = 4e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| ||||| ||||| || ||||| || || || ||||| || | ||| | | ||||||
Sbjct 13120233 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCC 13120292
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | || || || || ||||| | |||||| || | | || || ||||| |||
Sbjct 13120293 TCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCT 13120352
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || || ||| |||| | || ||| ||| || |||||||| ||||||
Sbjct 13120353 TGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTATAGTT 13120412
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || ||||| |||||||| | ||||||
Sbjct 13120413 TTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444
>seq1213
Length=7437389
Score = 87.8 bits (96), Expect = 4e-12
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || || ||||| || ||||| || || |||||||| |||| | || | || |||
Sbjct 1838113 AGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 1838172
Query 151953 TCTAGGCT--TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| | || ||||||| |||| || || | |||||| |||| | || ||||| || |
Sbjct 1838173 TCCAA-CTGCTTTCCCG-CGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGT 1838230
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
|||| || || || || | |||| ||| | ||| || || | ||||||||
Sbjct 1838231 CTTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAG 1838290
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || ||||| ||||||||||| | ||||||
Sbjct 1838291 TCTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 1838324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153802808688607
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |