Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1207 122 2e-22 seq1213 87.8 4e-12 >seq1207 Length=20116479 Score = 122 bits (134), Expect = 2e-22 Identities = 162/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| || ||||| ||||| || ||||| ||||| || ||||| |||| || |||| | Sbjct 17430748 AGTCTTAGAACAAGGTGAAGTGTCGACTCCTTTTGAATATTGTAGTCGGATAGGGTTCGC 17430807 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| |||| || || ||||||||||| | ||||| || | || || || || Sbjct 17430808 CCATCCTCTAATTGCTTACCAGCGAAGATAAGGCGTTGCTGATCTGGCGGTATACCCTCT 17430867 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGA 152063 || || |||||||| ||| || |||| | | || ||| ||| || ||||| Sbjct 17430868 TTATCCTGAATTTTCGCTTTCACGTTCTCGATGGAATC---ACTTGGCTCAACCTCAAGT 17430924 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||||| || || ||||| || ||||| | ||||||||| Sbjct 17430925 GTTATAGTTTTTCCAGTAAGAGTTTTTACGAAAATCTGCATTTT 17430968 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| ||||| || ||||| || || || ||||| || | ||| | | |||||| Sbjct 13120233 AGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTCAGATAAGGACCGCCCATCC 13120292 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || || ||||| | |||||| || | | || || ||||| ||| Sbjct 13120293 TCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCT 13120352 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| |||| | || ||| ||| || |||||||| |||||| Sbjct 13120353 TGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTCGACCTCAAGAGTTATAGTT 13120412 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| |||||||| | |||||| Sbjct 13120413 TTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444 >seq1213 Length=7437389 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || ||||| || || |||||||| |||| | || | || ||| Sbjct 1838113 AGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCT 1838172 Query 151953 TCTAGGCT--TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | || ||||||| |||| || || | |||||| |||| | || ||||| || | Sbjct 1838173 TCCAA-CTGCTTTCCCG-CGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGT 1838230 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || || || | |||| ||| | ||| || || | |||||||| Sbjct 1838231 CTTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAG 1838290 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||||||| | |||||| Sbjct 1838291 TCTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 1838324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153802808688607