Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 129 1e-24
seq1213 123 5e-23
>seq1207
Length=20116479
Score = 129 bits (142), Expect = 1e-24
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 282869 TGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC 282928
|| ||||||||| || ||||| || || || | || || || || || ||||||||
Sbjct 13120214 TGCACCACCACGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTC 13120273
Query 282929 AGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACC 282988
|| | | || |||||||| | || || || ||||| || | ||| || || ||
Sbjct 13120274 AGATAAGGACCGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGG 13120333
Query 282989 CGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048
|||||||||||||||||||| ||||| || ||||| | || |||| || |||| ||
Sbjct 13120334 TGGAATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTC 13120393
Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| || ||||| || || || || || | ||| || ||||| ||||||||
Sbjct 13120394 GACCTCAAGAGTTATAGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444
Score = 102 bits (112), Expect = 2e-16
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| ||||| || |||||||| | || || || |||||||||| ||| || || || |||
Sbjct 17430775 TCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAG 17430834
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| | ||||| || || ||| |||||||| || || || || || ||||| ||| |
Sbjct 17430835 ATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATCCTGAATTTTCGCTTTCACGTTC 17430894
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
||||| | || | || || || || || || || || || || | ||| || |||
Sbjct 17430895 TCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTACG 17430954
Query 283089 AATATCTGCATTTT 283102
|| |||||||||||
Sbjct 17430955 AAAATCTGCATTTT 17430968
>seq1213
Length=7437389
Score = 123 bits (136), Expect = 5e-23
Identities = 173/242 (71%), Gaps = 3/242 (1%)
Strand=Plus/Plus
Query 282858 AAAATAAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGG 282917
|||||||| | |||| |||||||||||||| ||||| || | || || || ||
Sbjct 1837858 AAAATAAA---TTAACCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGA 1837914
Query 282918 ATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGT 282977
||||||||||| | ||| |||||||| || || | || || || || || |||| |||
Sbjct 1837915 ATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGC 1837974
Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTG 283037
|| || || ||||| ||||||||||| |||||||| || || || | || || | |
Sbjct 1837975 TGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAG 1838034
Query 283038 TCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097
|| | || || || || ||||| ||||| || || | ||||| || || || |||
Sbjct 1838035 TCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGC 1838094
Query 283098 AT 283099
||
Sbjct 1838095 AT 1838096
Score = 123 bits (136), Expect = 5e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| ||||| || | || || || || ||||||||||| |
Sbjct 1838097 ACCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGA 1838156
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||| || || | || || || || || |||| ||| || || || ||
Sbjct 1838157 AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGG 1838216
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || || |||||||| ||||| || || ||| | || || | ||| || || ||
Sbjct 1838217 AATGCCTTCTTTGTCTTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAAC 1838276
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||| || ||||| || || | ||||| ||||||||||||||
Sbjct 1838277 CTCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 1838324
Score = 118 bits (130), Expect = 2e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| ||||| || | || || || || ||||||||||| |
Sbjct 1844573 ACCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGA 1844514
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||| || || | || || || || || |||| ||| || || || ||
Sbjct 1844513 AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGG 1844454
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| ||||| || | || || | ||| | || ||
Sbjct 1844453 AATGCCCTCCTTGTCCTGGATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCAC 1844394
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || || | ||||| || || || |||||
Sbjct 1844393 CTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346
Score = 114 bits (126), Expect = 3e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| ||||| || | || || || || || |||||||| |
Sbjct 1844345 ACCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGA 1844286
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||| || || | || || || || || |||| ||| || || || ||
Sbjct 1844285 AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGG 1844226
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| || || || | || || | ||| | || ||
Sbjct 1844225 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCAC 1844166
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| || || | ||||| || || ||||||||
Sbjct 1844165 CTCAAGTGTGATGGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118
Score = 102 bits (112), Expect = 2e-16
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930
|||| || || || || || || ||||| | || || || || ||||||||||| |
Sbjct 1844802 AACCGCCGCGGAGACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGG 1844743
Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
||| |||||||| || || | || || || || || |||| ||| || || || |
Sbjct 1844742 AAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTG 1844683
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||| ||||||||||| |||||||| || || || | || || | ||| | || |
Sbjct 1844682 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCA 1844623
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || || ||||| ||||| || || | ||||| || || || |||||
Sbjct 1844622 CCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046722878391918
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |