Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1207 129 1e-24 seq1213 123 5e-23 >seq1207 Length=20116479 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282869 TGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC 282928 || ||||||||| || ||||| || || || | || || || || || |||||||| Sbjct 13120214 TGCACCACCACGAAGACGAAGCACAAGGTGAAGGGTTGACTCCTTCTGAATATTGTAGTC 13120273 Query 282929 AGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACC 282988 || | | || |||||||| | || || || ||||| || | ||| || || || Sbjct 13120274 AGATAAGGACCGCCCATCCTCCAACTGCTTGCCAGCAAAAATAAGACGCTGCTGATCTGG 13120333 Query 282989 CGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048 |||||||||||||||||||| ||||| || ||||| | || |||| || |||| || Sbjct 13120334 TGGAATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTCTCAATAGAATCAGAAGGCTC 13120393 Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||| || || || || || | ||| || ||||| |||||||| Sbjct 13120394 GACCTCAAGAGTTATAGTTTTGCCAGTAAGAGTTTTCACGAAAATCTGCAT 13120444 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| || |||||||| | || || || |||||||||| ||| || || || ||| Sbjct 17430775 TCCTTTTGAATATTGTAGTCGGATAGGGTTCGCCCATCCTCTAATTGCTTACCAGCGAAG 17430834 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||||| || || ||| |||||||| || || || || || ||||| ||| | Sbjct 17430835 ATAAGGCGTTGCTGATCTGGCGGTATACCCTCTTTATCCTGAATTTTCGCTTTCACGTTC 17430894 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| | || | || || || || || || || || || || | ||| || ||| Sbjct 17430895 TCGATGGAATCACTTGGCTCAACCTCAAGTGTTATAGTTTTTCCAGTAAGAGTTTTTACG 17430954 Query 283089 AATATCTGCATTTT 283102 || ||||||||||| Sbjct 17430955 AAAATCTGCATTTT 17430968 >seq1213 Length=7437389 Score = 123 bits (136), Expect = 5e-23 Identities = 173/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 282858 AAAATAAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGG 282917 |||||||| | |||| |||||||||||||| ||||| || | || || || || Sbjct 1837858 AAAATAAA---TTAACCGCCACGCAGGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGA 1837914 Query 282918 ATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGT 282977 ||||||||||| | ||| |||||||| || || | || || || || || |||| ||| Sbjct 1837915 ATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGC 1837974 Query 282978 TGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTG 283037 || || || ||||| ||||||||||| |||||||| || || || | || || | | Sbjct 1837975 TGCTGATCCGGTGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAG 1838034 Query 283038 TCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 || | || || || || ||||| ||||| || || | ||||| || || || ||| Sbjct 1838035 TCACTCGGCTCCACCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGC 1838094 Query 283098 AT 283099 || Sbjct 1838095 AT 1838096 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| ||||| || | || || || || ||||||||||| | Sbjct 1838097 ACCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGA 1838156 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| || || | || || || || || |||| ||| || || || || Sbjct 1838157 AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGG 1838216 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || |||||||| ||||| || || ||| | || || | ||| || || || Sbjct 1838217 AATGCCTTCTTTGTCTTGTATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAAC 1838276 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| || ||||| || || | ||||| |||||||||||||| Sbjct 1838277 CTCCAAAGTAATAGTCTTTCCAGTGAGTGTCTTCACGAATATCTGCAT 1838324 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| ||||| || | || || || || ||||||||||| | Sbjct 1844573 ACCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGA 1844514 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| || || | || || || || || |||| ||| || || || || Sbjct 1844513 AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGG 1844454 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| ||||| || | || || | ||| | || || Sbjct 1844453 AATGCCCTCCTTGTCCTGGATCTTCGCTTTCACATTCTCAATCGAGTCACTCGGCTCCAC 1844394 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| || || || ||||| Sbjct 1844393 CTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| ||||| || | || || || || || |||||||| | Sbjct 1844345 ACCACCACGAAGACGAAGCACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGA 1844286 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| || || | || || || || || |||| ||| || || || || Sbjct 1844285 AAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGG 1844226 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || || | || || | ||| | || || Sbjct 1844225 AATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCAC 1844166 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | ||||| || || |||||||| Sbjct 1844165 CTCAAGTGTGATGGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118 Score = 102 bits (112), Expect = 2e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||| || || || || || || ||||| | || || || || ||||||||||| | Sbjct 1844802 AACCGCCGCGGAGACGCAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGG 1844743 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||| |||||||| || || | || || || || || |||| ||| || || || | Sbjct 1844742 AAAGGGTGCGGCCGTCTTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTG 1844683 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| ||||||||||| |||||||| || || || | || || | ||| | || | Sbjct 1844682 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCA 1844623 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| || || | ||||| || || || ||||| Sbjct 1844622 CCTCAAGTGTGATGGTCTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046722878391918