Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1209 170 2e-37 >seq1209 Length=14622995 Score = 170 bits (188), Expect = 2e-37 Identities = 364/536 (68%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 23497 TTAAACAATAAA-CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATT 23555 ||||| ||||| ||||||||||| || ||||||||||||| || ||||| || || Sbjct 7446615 TTAAA-AATAAGGCATGCAAAATCGGTGTGGAGGCCTTCATCCCGGCTGATCAACTCGTT 7446557 Query 23556 AGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGA 23615 || || | |||||||| | || || || || | |||||| || | ||||||||| Sbjct 7446556 GCTGAAGGTGAGGCCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATAGAAGCAAATGA 7446497 Query 23616 TCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGC 23675 || |||||||||| || |||||||| || || ||||| || || | | ||| || Sbjct 7446496 ACCAGAAAAGAAAACGCCTTCAACAGCAGCGAATGCCACTAGCCGCTCAGCGTATGGGGC 7446437 Query 23676 ATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGT 23735 || || | |||||| | | ||||| || ||| ||||| | || Sbjct 7446436 TTTCCTATTTGCAATCCACCTAAGAGCCCAATCGGCTTTCTTAGCAACACATGGCAGCGT 7446377 Query 23736 TTCAATTGCTTTTAAGAGAAAAGTTTT-TTCTTCATTATCTGTTATATATGTATCAATTA 23794 | || || || || | |||||| ||| | ||| | || || |||||||| | Sbjct 7446376 CTGAACGGCGTTAAACA-AAAAGTCGCGTTCCACTGGATCCTTAATGTAGGTATCAATCA 7446318 Query 23795 GTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATC 23854 | | | |||||||| |||||||| ||||| | || | || | ||| |||||||| | Sbjct 7446317 GAAGAGAGTACATTTCGGAATGAATGTTTTCGACGGCGACTTGCATCCCGTAAAAACAAC 7446258 Query 23855 TAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATAC 23914 ||| || | | ||| || || ||| |||| | || || ||||| ||||| || | Sbjct 7446257 GAGCCTCGGGAATTTGGACTTCGTTACAAAAGTTCAAAGTTAGGTTTTCATTAACGATGC 7446198 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATA 23974 ||||||| || ||||| ||||| | |||||| ||| ||||| | ||| || | || Sbjct 7446197 CATCACTGGCTGCAAAAAAAGCCAAAACATAAGATATGAAATGACGTTCGCCA-TCATTA 7446139 Query 23975 ATTTTTTCC-AATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | |||| ||||| | | || || | ||||| ||||| |||||||||||||| Sbjct 7446138 AGGCCTTCCCAATCAGTGAGGTCCTTCGCCAAATCGACTTCCTCAACTGTCCAAAA 7446083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521480066863800