Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1213 134 1e-26
>seq1213
Length=7437389
Score = 134 bits (148), Expect = 1e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
|||||||||||| || |||||| || |||||||| |||| || ||| |||| ||
Sbjct 1838115 CACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1838174
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| || || || |||| |||||||||||| | || | ||||| || ||
Sbjct 1838175 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCTTCTTTGTCTTG 1838234
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||||| || |||| | ||| | || ||||||| ||||| |||||
Sbjct 1838235 TATCTTAGCCTTCACGTTTTCTATCGAGTCACTAGGCTCAACCTCCAAAGTAATAGTCTT 1838294
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339
||| ||||| ||||||||||| || |||||||
Sbjct 1838295 TCCAGTGAGTGTCTTCACGAATATCTGCATGA 1838326
Score = 118 bits (130), Expect = 8e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
|||||||||||| || |||||| || |||||||| |||| || ||| |||| ||
Sbjct 1837887 CACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1837946
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| || || || |||| |||||||||||| | || | || ||||| |||
Sbjct 1837947 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTG 1838006
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||||| | | || | ||| | |||||||| | || || |||||
Sbjct 1838007 GATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTT 1838066
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || |||||||| |||||||||||
Sbjct 1838067 GCCAGTAAGTGTCTTCACAAAGATTTGCAT 1838096
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
|||||||||||| || |||||| || |||||||| |||| || ||| |||| ||
Sbjct 1844555 CACCAGGTGAAGTGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1844496
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| || || || |||| |||||||||||| | || | || ||||| |||
Sbjct 1844495 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTG 1844436
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| |||| | ||| | || | ||| | |||||||| | || || ||||
Sbjct 1844435 GATCTTC-GCTTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCT 1844377
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || || || |||||||| |||||||||||
Sbjct 1844376 TGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844346
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
|||||||||||| || |||||| || || ||||| |||| || ||| |||| ||
Sbjct 1844327 CACCAGGTGAAGTGTCGACTCCTTCTGAATATTGTAGTCGGAAAGGGTGCGGCCGTCTTC 1844268
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| |||||| || || || |||| |||||||||||| | || | || ||||| |||
Sbjct 1844267 CAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTCCTG 1844208
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
|||||| ||||| | | || | ||| | |||||||| | || || |||||
Sbjct 1844207 GATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGTCTT 1844148
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || |||||||| ||||| |||||
Sbjct 1844147 GCCAGTAAGCGTCTTCACAAAGATCTGCAT 1844118
Score = 105 bits (116), Expect = 5e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184
|| ||| || || || || |||||| || |||||||| |||| || ||| ||||
Sbjct 1844786 CAGCACAAGATGCAGAGTCGACTCCTTCTGTATGTTGTAGTCGGAAAGGGTGCGGCCGTC 1844727
Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244
|||| |||||| || || || |||| |||||||||||| | || | || ||||| ||
Sbjct 1844726 TTCCAACTGCTTTCCCGCGAATATCAGACGCTGCTGATCCGGTGGAATGCCCTCCTTGTC 1844667
Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304
| |||||| ||||| | | || | ||| | |||||||| | || || ||
Sbjct 1844666 CTGGATCTTCGCCTTCACATTCTCAATCGAGTCACTCGGCTCCACCTCAAGTGTGATGGT 1844607
Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| || || || |||||||| |||||||||||
Sbjct 1844606 CTTGCCAGTAAGTGTCTTCACAAAGATTTGCAT 1844574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359985060554889
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |