Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015- 12-10] 1,217 sequences; 114,963,228 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1207 140 8e-28 seq1213 118 3e-21 >seq1207 Length=20116479 Score = 140 bits (154), Expect = 8e-28 Identities = 168/226 (74%), Gaps = 7/226 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||| |||||||| || |||||||| || || || ||||| || Sbjct 17430968 AAAATGC---AGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGA- 17430913 Query 177975 AGCTCAGACA--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || || | ||||||||||||| ||| || |||||||| ||||| || || || | Sbjct 17430912 -GCCAAGTGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGC 17430854 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || |||||||| ||||||||||| || || || | || ||||| | || || ||| Sbjct 17430853 CAGATCAGCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCG 17430794 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | || || | ||||| || || ||||| || |||||| | ||||| Sbjct 17430793 ACTACAATATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACT 17430748 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||||| || || ||||| || || || ||||| || || || Sbjct 13120441 CAGATTTTCGTGAAAACTCTTACTGGCAAAACTATAACTCTTGAGGTCGAGCCTTCTGAT 13120382 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || ||||| || || |||||||| ||||| || || || || || || ||||| Sbjct 13120381 TCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAGCAG 13120322 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || || ||| | || ||||| || | | | || || || | Sbjct 13120321 CGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAATATT 13120262 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || || ||||| Sbjct 13120261 CAGAAGGAGTCAACCCTTCACCTTGT 13120236 >seq1213 Length=7437389 Score = 118 bits (130), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || || || || || || ||||| || |||||||| || || Sbjct 1844577 CAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGA--GCCGAGTG 1844634 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || ||||| || || ||||| |||||||| || || || || ||||| |||| Sbjct 1844635 ACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAGC 1844694 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || ||||| ||||| ||| | ||||| || | || ||| |||| || ||| Sbjct 1844695 AGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAACA 1844754 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || ||||||||||| Sbjct 1844755 TACAGAAGGAGTCGACTCTGCATCTTGT 1844782 Score = 109 bits (120), Expect = 1e-18 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || ||||| ||||| || || || | ||||| || || || Sbjct 1838321 CAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGA--GCCTAGTG 1838264 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || || ||||| || ||||| || ||||||||||| || || ||||| |||| Sbjct 1838263 ACTCGATAGAAAACGTGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCAGC 1838204 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || ||||| ||||| ||| | ||||| || | || ||| |||| || ||| Sbjct 1838203 AGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAACA 1838144 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || ||||| || || || Sbjct 1838143 TTCAGAAGGAGTCGACACTTCACCTGGT 1838116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203712430445098