Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Echinococcus_20multilocularis_20[genbank_20GCA_5F000469725.3_202015-
12-10] 1,217 sequences; 114,963,228 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq1207 140 8e-28
seq1213 118 3e-21
>seq1207
Length=20116479
Score = 140 bits (154), Expect = 8e-28
Identities = 168/226 (74%), Gaps = 7/226 (3%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | |||||||| |||||||| || |||||||| || || || ||||| ||
Sbjct 17430968 AAAATGC---AGATTTTCGTAAAAACTCTTACTGGAAAAACTATAACACTTGAGGTTGA- 17430913
Query 177975 AGCTCAGACA--CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| || | ||||||||||||| ||| || |||||||| ||||| || || || |
Sbjct 17430912 -GCCAAGTGATTCCATCGAGAACGTGAAAGCGAAAATTCAGGATAAAGAGGGTATACCGC 17430854
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092
| || |||||||| ||||||||||| || || || | || ||||| | || || |||
Sbjct 17430853 CAGATCAGCAACGCCTTATCTTCGCTGGTAAGCAATTAGAGGATGGGCGAACCCTATCCG 17430794
Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
| || || | ||||| || || ||||| || |||||| | |||||
Sbjct 17430793 ACTACAATATTCAAAAGGAGTCGACACTTCACCTTGTTCTAAGACT 17430748
Score = 96.9 bits (106), Expect = 8e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||||||||| || || ||||| || || || ||||| || || ||
Sbjct 13120441 CAGATTTTCGTGAAAACTCTTACTGGCAAAACTATAACTCTTGAGGTCGAGCCTTCTGAT 13120382
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
| || ||||| || || |||||||| ||||| || || || || || || |||||
Sbjct 13120381 TCTATTGAGAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATTCCACCAGATCAGCAG 13120322
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||| || || || || ||| | || ||||| || | | | || || || |
Sbjct 13120321 CGTCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGGCGGTCCTTATCTGACTACAATATT 13120262
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || ||||| || || |||||
Sbjct 13120261 CAGAAGGAGTCAACCCTTCACCTTGT 13120236
>seq1213
Length=7437389
Score = 118 bits (130), Expect = 3e-21
Identities = 152/208 (73%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
||||| || ||||| || || || || || || ||||| || |||||||| || ||
Sbjct 1844577 CAAATCTTTGTGAAGACACTTACTGGCAAGACCATCACACTTGAGGTGGA--GCCGAGTG 1844634
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | || ||||| || || ||||| |||||||| || || || || ||||| ||||
Sbjct 1844635 ACTCGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCACCGGATCAGC 1844694
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || || ||||| ||||| ||| | ||||| || | || ||| |||| || |||
Sbjct 1844695 AGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAACA 1844754
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
| || || || || || |||||||||||
Sbjct 1844755 TACAGAAGGAGTCGACTCTGCATCTTGT 1844782
Score = 109 bits (120), Expect = 1e-18
Identities = 150/208 (72%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || ||||| ||||| || || || | ||||| || || ||
Sbjct 1838321 CAGATATTCGTGAAGACACTCACTGGAAAGACTATTACTTTGGAGGTTGA--GCCTAGTG 1838264
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|| | || || ||||| || ||||| || ||||||||||| || || ||||| ||||
Sbjct 1838263 ACTCGATAGAAAACGTGAAGGCTAAGATACAAGACAAAGAAGGCATTCCACCGGATCAGC 1838204
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || || ||||| ||||| ||| | ||||| || | || ||| |||| || |||
Sbjct 1838203 AGCGTCTGATATTCGCGGGAAAGCAGTTGGAAGACGGCCGCACCCTTTCCGACTACAACA 1838144
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
| || || || || ||||| || || ||
Sbjct 1838143 TTCAGAAGGAGTCGACACTTCACCTGGT 1838116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203712430445098
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |